| Protein models deposited in our database - total number 1: | 1144494 |
| Protein models predicted using AlphaFold v41: | 681469 |
| Protein models predicted using ESM v12: | 457042 |
| Protein models predicted using AlphaFold v1 (All categories)1: | 5983 |
| Protein models predicted using AlphaFold v1 and classified as confirmed AF1 knots1: | 348 |
| Protein models predicted using AlphaFold v1 and classified as AF1 artifacts1: | 2929 |
| Protein models predicted using AlphaFold v1 and classified as AF1 unsure1: | 65 |
| List of all models for which knots were computed for Download: | all.txt.gz |
| List of AlphaFold v4 unknotted structures with a probability of the main knot < 0.42 and/or probability of unknot (01) >= 0.5 (500 MB) | af4unknotted.tsv.gz |
| List of AlphaFold v4 structures that were not tested for the existence of knots due to a low AlphaFold structure prediction score (pLDDT < 70) (110 MB) | af4pLDDTlow.tsv.gz |
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1 Total number of protein models from all organisms. 2 ESM models were generated by the AlphaKnot team using the published ESM fold v1 model from Nov. 2022. | |
