AlphaKnot 2.0: Knots on AlphaFold generated structures

Found: ...COUNTING... knotted stuctures in AlphaKnot 2.0. Displaying 1 - 100. No filters applied

Search results C-end knot depth between 250 and 251

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Knot type	Category	Uniprot	Organism	pLDDT knotcore	Protein name
3₁	AF4	A0A7Y9E7I5-F1	Nocardioides panaciterrulae	97.4	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
3₁	ESM1	A0A1G9UTX5-F1	Nocardioides szechwanensis	95.7	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
3₁	ESM1	A0A7Y9F2A7-F1	Nocardioides marinisabuli	94.4	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
3₁	AF4	A0A2S3YGZ2-F1	Sinorhizobium americanum	93.8	Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine aminopeptidase) (LAP) (EC 3.4.11.10) (Leucyl aminopeptidase)
3₁	AF4	A0A7R9BK76-F1	Notodromas monacha	93.7	PHF5-like protein
3₁	AF4	A0A7Y4WJP9-F1	Planctomycetes bacterium	93.2	tRNA 2-selenouridine(34) synthase MnmH
3₁	ESM1	E6SF10-F1	Intrasporangium calvum	93.0	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
3₁	AF4	A0A124FF89-F1	Thermococcus sibiricus	92.7	Putative type II restriction endonuclease
3₁	ESM1	A0A563DZA5-F1	Leekyejoonella antrihumi	92.7	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
3₁	AF4	F2PRG0-F1	Horse ringworm fungus	92.7	18S rRNA aminocarboxypropyltransferase (EC 2.5.1.-)

Showing 1 to 10 of 100 entries

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