Status Status Details Main knot Main knot (knot pull) Project name Input data Model lengths Last status changed Job submitted Key What to compute? Closure Number of random closures Accuracy Trajectory (Knot Pull) Search Identical
FINISHED 2024-02-12 10:37:37: AF-O00534-F1 - main chain knotted: 6 63 (70%) 63(A)[-6(+), -10(-), -12(+), -4(+), -2(-), -8(-)](A) Recomputed from: O00534-F1-AFv4 AF-O00534-F1.cif
2024-02-12 11:56:27 2024-02-12 10:35:46 59b4d106a929af Full matrix always close by statistical methods 100 Detailed Yes Yes: Identity: 70%

Results for job AF-O00534-F1


Topology type: KNOTTED

Information
Main knot 63 (70%)
Knot fingerprint K 63(x2) 31(x5)
Global pLDDT 83.7

Artifact check
Topological complexity Knot with a low (6) number of crossings
pLDDT Knot-core Very high (90.2); 94.9% has >70 pLDDT; 0.3% has <50 pLDDT
pLDDT N-end knot-core border Very high (95.8); 100.0% has >70 pLDDT; 0.0% has <50 pLDDT
pLDDT C-end knot-core border Low (63.4); 45.5% has >70 pLDDT; 27.3% has <50 pLDDT
C-alpha clashes No clashes
Knot map

Knot cutoff: 48 %


Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Slipknot tails Slipknot loops Main knot
88.5 29-611 582 1-28, 612-786 28 175 Knot
88.6 148-592 444 1-147, 593-786 147 194 Slipknot
Model Sequence
MVHFCGLLTLHREPVPLKSISVSVNIYEFVAGVSATLNYENEEKVPLEAFFVFPMDEDSAVYSFEALVDGKKIVAELQDKMKARTNYEKAISQGHQAFLLEGDSSSRDVFSCNVGNLQPGSKAAVTLKYVQELPLEADGALRFVLPAVLNPRYQFSGSSKDSCLNVKTPIVPVEDLPYTLSMVATIDSQHGIEKVQSNCPLSPTEYLGEDKTSAQVSLAAGHKFDRDVELLIYYNEVHTPSVVLEMGMPNMKPGHLMGDPSAMVSFYPNIPEDQPSNTCGEFIFLMDRSGSMQSPMSSQDTSQLRIQAAKETLILLLKSLPIGCYFNIYGFGSSYEACFPESVKYTQQTMEEALGRVKLMQADLGGTEILAPLQNIYRGPSIPGHPLQLFVFTDGEVTDTFSVIKEVRINRQKHRCFSFGIGEGTSTSLIKGIARASGGTSEFITGKDRMQSKALRTLKRSLQPVVEDVSLSWHLPPGLSAKMLSPEQTVIFRGQRLISYAQLTGRMPAAETTGEVCLKYTLQGKTFEDKVTFPLQPKPDVNLTIHRLAAKSLLQTKDMGLRETPASDKKDALNLSLESGVISSFTAFIAINKELNKPVQGPLAHRDVPRPILLGASAPLKIKCQSGFRKALHSDRPPSASQPRGELMCYKAKTFQMDDYSLCGLISHKDQHSPGFGENHLVQLIYHQNANGSWDLNEDLAKILGMSLEEIMAAQPAELVDSSGWATILAVIWLHSNGKDLKCEWELLERKAVAWMRAHAGSTMPSVVKAAITFLKSSVDPAIFAF
Knot Pull Trajectory
Identical Structures in AlphaKnot
Structure ID Identity Length AF4 Model Topology ESM Model Topology Organism Link
O00534
96.4 %
786
63 (70%)
N/A
Human
A0A024R3H3
96.4 %
786
31 (58%)
N/A
Human
A8K6N3
96.3 %
786
63 (70%)
N/A
Human
A0A2R9BIJ4
95.5 %
786
63 (67%)
N/A
Pygmy chimpanzee
H2Q509
95.3 %
785
63 (69%)
N/A
Chimpanzee
G3S1Y9
95.2 %
786
63 (70%)
N/A
Western lowland gorilla
A0A2J8N1T0
95.2 %
785
63 (71%)
N/A
Chimpanzee
G1R775
94.5 %
786
63 (68%)
N/A
Northern white-cheeked gibbon
A0A2J8X032
93.1 %
786
63 (70%)
N/A
Sumatran orangutan
H2NFN9
92.5 %
821
63 (78%)
N/A
Sumatran orangutan
A0A2K6PU45
91.2 %
786
31 (59%)
N/A
Golden snub-nosed monkey
A0A2K5HXW1
90.9 %
786
63 (71%)
N/A
Peters' Angolan colobus
A0A2K5WGB0
90.9 %
786
63 (72%)
N/A
Crab-eating macaque
A0A2K5YI15
90.9 %
786
63 (71%)
N/A
Drill
A0A2K6LXJ2
90.9 %
786
63 (70%)
N/A
Black snub-nosed monkey
G7NCN9
90.8 %
786
63 (72%)
N/A
Rhesus macaque
A0A096NDY1
90.8 %
786
63 (74%)
N/A
Olive baboon
G7PPE4
90.8 %
786
63 (74%)
N/A
Crab-eating macaque
H9FUD4
90.6 %
786
63 (69%)
N/A
Rhesus macaque
A0A2K6CIS8
90.7 %
786
63 (73%)
N/A
Pig-tailed macaque
A0A2K5NIE1
90.6 %
786
52 (60%)
N/A
Sooty mangabey
M3ZC12
90.2 %
772
63 (73%)
N/A
Northern white-cheeked gibbon
F6VIM6
91.1 %
761
63 (81%)
N/A
Rhesus macaque
A0A2K6PU34
86.8 %
781
63 (70%)
N/A
Golden snub-nosed monkey
A0A6J3IEM7
86.6 %
786
63 (70%)
N/A
Brown-capped capuchin
A0A2K5PZ11
86.6 %
786
63 (66%)
N/A
Panamanian white-faced capuchin
A0A7N9CHL8
86.5 %
781
63 (68%)
N/A
Crab-eating macaque
A0A2K6LXI6
86.4 %
781
63 (68%)
N/A
Black snub-nosed monkey
A0A5F7ZN63
86.3 %
781
63 (63%)
N/A
Rhesus macaque
A0A2K5NI52
86.2 %
781
63 (65%)
N/A
Sooty mangabey
A0A2K5ECF0
85.7 %
786
63 (72%)
N/A
Ma's night monkey
A0A5F4W412
85.5 %
787
63 (72%)
N/A
White-tufted-ear marmoset
A0A2K6SA82
85.3 %
785
63 (68%)
N/A
Bolivian squirrel monkey
A0A2K6PU31
86.9 %
756
63 (73%)
N/A
Golden snub-nosed monkey
A0A2K6LXG9
86.7 %
756
63 (73%)
N/A
Black snub-nosed monkey
F7IDW8
84.1 %
733
63 (73%)
N/A
White-tufted-ear marmoset
A0A0D9S455
90.1 %
675
63 (79%)
N/A
Green monkey
A0A1U7SZ47
77.5 %
788
52 (54%)
N/A
Philippine tarsier
A0A1U7SSG4
77.5 %
821
63 (78%)
N/A
Philippine tarsier
A0A1U7TAH4
77.5 %
810
63 (76%)
N/A
Philippine tarsier
A0A7J7RRE6
75.2 %
778
63 (68%)
N/A
Greater horseshoe bat
A0A671EVW5
75.1 %
781
63 (72%)
N/A
Greater horseshoe bat
A0A671EW14
74.3 %
778
63 (68%)
N/A
Greater horseshoe bat
A0A7J8H8H2
73.9 %
789
63 (70%)
N/A
Egyptian rousette
F6TSA1
73.7 %
781
63 (72%)
N/A
Horse
H0X414
73.2 %
783
31 (57%)
N/A
Small-eared galago
L5KH41
70.6 %
919
63 (73%)
N/A
Black flying fox
A0A6J0AQK5
71.4 %
801
63 (69%)
N/A
Alpaca
A0A4X1VDH8
71.9 %
782
63 (71%)
N/A
Pig
A0A480T2B5
71.9 %
782
63 (69%)
N/A
Pig
A0A4X1VK76
71.8 %
779
63 (77%)
N/A
Pig
I3N2M5
71.6 %
779
63 (68%)
N/A
Thirteen-lined ground squirrel
A0A3Q7THZ0
71.6 %
783
63 (67%)
N/A
Red fox
A0A811ZN02
71.6 %
784
52 (53%)
N/A
Raccoon dog
A0A7N5KGH7
71.4 %
782
63 (70%)
N/A
Giant panda
A0A3Q7SEY9
71.4 %
784
63 (66%)
N/A
Red fox
A0A833YVI3
71.3 %
777
63 (74%)
N/A
pale spear-nosed bat
A0A6P3IR27
70.9 %
783
52 (53%)
N/A
Bison bison
I3M243
70.0 %
798
63 (69%)
N/A
Thirteen-lined ground squirrel
A0A6J2N3K0
71.0 %
781
63 (72%)
N/A
pale spear-nosed bat
A0A384BHX2
71.0 %
783
63 (71%)
N/A
Polar bear
A0A6P6EXU6
70.5 %
776
63 (71%)
N/A
Degu
A0A4X1VHG0
72.3 %
756
63 (75%)
N/A
Pig
A0A4X1VK71
72.0 %
760
63 (73%)
N/A
Pig
A0A3Q7VJY3
70.9 %
784
31 (51%)
N/A
Ursus arctos
F1N0E6
70.5 %
783
52 (61%)
N/A
Bovine
A0A384BGX6
70.8 %
784
63 (66%)
N/A
Polar bear
A0A6B0RFI1
70.5 %
821
63 (80%)
N/A
wild yak
A0A3Q7S7B1
70.9 %
782
63 (69%)
N/A
Northern fur seal
L7N1A2
70.7 %
774
31 (47%)
N/A
Little brown bat
A0A6P3EPU2
70.3 %
781
63 (72%)
N/A
Sheep
W5PK79
70.3 %
781
63 (72%)
N/A
Sheep
A0A452FAR3
70.3 %
781
63 (68%)
N/A
Goat
A0A6J2C1Q8
70.7 %
782
63 (61%)
N/A
California sealion
A0A4W2GUL1
70.3 %
783
52 (58%)
N/A
Hybrid cattle
L8I5I3
70.4 %
783
63 (66%)
N/A
wild yak
F1S8Z3
70.2 %
764
63 (72%)
N/A
Pig
A0A3Q7T455
70.4 %
781
63 (63%)
N/A
Red fox
A0A2U3YER2
70.4 %
783
63 (62%)
N/A
Weddell seal
A0A452TQS9
70.3 %
780
52 (53%)
N/A
Polar bear
A0A6J0ZD07
70.0 %
779
63 (69%)
N/A
Odocoileus virginianus
A0A3Q7X426
70.2 %
781
52 (53%)
N/A
Ursus arctos
A0A384BI70
70.2 %
781
31 (61%)
N/A
Polar bear
A0A7F8RJM1
70.1 %
784
31 (54%)
N/A
Weddell seal
A0A091DZV0
70.3 %
778
63 (80%)
N/A
Damaraland mole rat
L9JBJ5
70.0 %
878
63 (80%)
N/A
Chinese tree shrew
D2HZC5
71.1 %
759
63 (63%)
N/A
Giant panda
A0A3Q2LQ33
73.9 %
711
63 (73%)
N/A
Horse
A0A6P3QSU5
76.7 %
658
31 (68%)
N/A
Large flying fox
A0A6P6CSU2
78.7 %
638
31 (69%)
N/A
Large flying fox
A0A6J2BZK7
70.5 %
727
31 (48%)
N/A
California sealion
A0A7F8RJU9
70.0 %
724
52 (58%)
N/A
Weddell seal
A0A6J1XJ98
74.9 %
632
31 (74%)
N/A
Cheetah
A0A7F8RK81
76.6 %
619
31 (66%)
N/A
Weddell seal
A0A2Y9KI18
71.0 %
666
63 (71%)
N/A
Enhydra lutris
G3SLD4
72.3 %
611
63 (73%)
N/A
African elephant
G3IFU4
72.6 %
594
52 (56%)
N/A
Chinese hamster