Status Status Details Main knot Project name Input data Model lengths Last status changed Job submitted Key What to compute? Closure Number of random closures Accuracy Trajectory (Knot Pull) Search Identical
FINISHED 2023-12-13 09:46:50: AF-Q9PR55-F1 - main chain knotted: 7 71 (51%) Recomputed from: Q9PR55-F1-AFv4 AF-Q9PR55-F1.cif
 2023-12-13 09:47:00 2023-12-13 09:46:26 d6dae403939479 Full matrix always close by statistical methods 100 Detailed No Yes: Identity: 70%

Results for job AF-Q9PR55-F1

Topology type: KNOTTED

Information
Main knot 71 (51%)
Knot fingerprint K 71 31 51 51 31 31 51
Global pLDDT 89.4

Artifact check
Topological complexity Knot with a high (7) number of crossings
pLDDT Knot-core Very high (94.9); 100.0% has >70 pLDDT; 0.0% has <50 pLDDT
pLDDT N-end knot-core border Confident (70.7); 54.5% has >70 pLDDT; 9.1% has <50 pLDDT
pLDDT C-end knot-core border Very high (96.0); 100.0% has >70 pLDDT; 0.0% has <50 pLDDT
C-alpha clashes No clashes
Knot map

Knot cutoff: 48 %


Knotting data interpretation
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Slipknot tails Slipknot loops Main knot
None 12-87 75 1-11, 88-89 11 2 Knot
96.1 41-64 23 1-40, 65-89 40 25 Slipknot
96.2 31-75 44 1-30, 76-89 30 14 Knot
Model Sequence
MYNYKEVKHMGYGKGYLAMFKNKKVRFKVVNSFPDLKVQFVTSFPDYKVKISNSSSFCEETIKIQVVTSFPDVKLQKVTSFGDFEAYID
Identical Structures in AlphaKnot
Structure ID Identity Length AF4 Model Topology ESM Model Topology Organism Link
Q9PR55
97.0 %
89
71 (57%)
01 (83%)
strain ATCC 700970
A0A2C9DYA3
96.7 %
80
71 (53%)
01 (88%)
Ureaplasma parvum serovar 3
A0A356NAZ7
82.2 %
80
71 (50%)
01 (83%)
Clostridiales bacterium
A0A3B8VB67
82.2 %
80
71 (55%)
01 (83%)
Clostridiales bacterium
A0A7K3ZD35
79.1 %
80
71 (52%)
01 (82%)
Crenarchaeota archaeon
A0A246EH72
75.4 %
82
71 (55%)
01 (71%)
Fusobacterium nucleatum subsp
A0A2C6C218
73.6 %
82
71 (63%)
31 (81%)
Fusobacterium nucleatum subsp
A0A3C0W9T3
70.7 %
78
71 (48%)
01 (91%)
Oscillospiraceae bacterium
How to cite