A0A076EN42 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	23S rRNA (Guanosine(2251)-2'-O)-methyltransferase RlmB (rRNA methyltransferase)
Main knot	3₁ (92%)
Global pLDDT	84.27
Species	Nocardia opaca
UniProt	A0A076EN42
Structure Prediction Model	AlphaFold v4: A0A076EN42
PDB structures	-
Model length	322
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					92.9	251-292	42	1-250, 293-322	250	30

Model Sequence

MAGNSSRRGAIRKAGTKKGQVAGSGGQRRKGLEGRGATPPAEARTKHPAAKRAARAAREADKQPGRGRQTAGRKVLDGPENVLGRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRAADAGISILEVPRTDLDRLSANGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRG

Comments

ESM1

Categories voted by users:

Information

Protein name	23S rRNA (Guanosine(2251)-2'-O)-methyltransferase RlmB (rRNA methyltransferase)
Main knot	3₁ (84%)
Global pLDDT	88.75
Species	Nocardia opaca
UniProt	A0A076EN42
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	322
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					67.3	251-292	42	1-250, 293-322	250	30

Model Sequence

Comments

Domain	Bacteria
Family	Nocardiaceae
Species (Full Name)	Rhodococcus opacus (Nocardia opaca)
Gene	C5613_28095 EP51_19155
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR004441, IPR013123, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

A0A076EN42F1

AF4

Model Sequence

ESM1

Model Sequence