A0A087CYK2 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	23S rRNA methyltransferase
Main knot	3₁ (93%)
Global pLDDT	88.12
Species	Bifidobacterium reuteri
UniProt	A0A087CYK2
Structure Prediction Model	AlphaFold v4: A0A087CYK2
PDB structures	-
Model length	327
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.8	251-294	44	1-250, 295-327	250	33

Model Sequence

MHAPNQISLAAKASGEPEFREIGLGPWSETHPGEPRPDNPASPNYSRHFDTELLNEGDRRNVLDRYRYWSVQAIKDDLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAGRVHIVGPHKWNRKGALMTELYQHVEHHPSIAELVECWRNRIAGEIAYERARAAAAAIHIHESAGSVSALLQCETASATPDDSVAHDETPSFQSSAIADAFREGGASAQSATQSATQRAMSELAAADNRIKELEAARIIALDIIPGAVPMETYRLPKRCLLLFGAEGPGLSQKALDLADDVVYISQFGSVRSINAGAAAAVAMHAWIAQHAAPASV

Comments

ESM1

Categories voted by users:

Information

Protein name	23S rRNA methyltransferase
Main knot	3₁ (89%)
Global pLDDT	74.78
Species	Bifidobacterium reuteri
UniProt	A0A087CYK2
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	327
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					42.8	251-294	44	1-250, 295-327	250	33

Model Sequence

Comments

Domain	Bacteria
Family	Bifidobacteriaceae
Species (Full Name)	Bifidobacterium reuteri DSM 23975
Gene	BREU_0462
PFAM codes	PF00588
InterPro codes	IPR001537, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A087CYK2F1

AF4

Model Sequence

ESM1

Model Sequence