| Protein name |
Conjugative transfer protein s063
|
| Main knot |
31 (86%)
|
| Global pLDDT |
87.16
|
| Species |
Vibrio parahaemolyticus
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A0C5GS28
|
| PDB structures |
-
|
| Model length |
231
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
95.2 | 42-142 | 101 | 1-41, 143-231 | 41 | 89 |
|
Model Sequence |
MQLKEKEMTDLAETSLEQQPTKKERNNADLSRPVFKRVLKVNSLQAQRVVERSFQRVSDSLFSIDVILRIIGEQDEIDQVESIIQEHIEKVSVDLDTATNQLQKLMEDNGIEGAPEYTSPNQYDIEINSPQVAQFAHLVRKLDNLMLLVDTLWLNSILTSKQRKDATYQWQQRLIKLAGRIIGIEKRARISAHSKGKKDEVEAAAPTQETTDEEIASEADNAESGEDEKAA
|
| Protein name |
Conjugative transfer protein s063
|
| Main knot |
31 (89%)
|
| Global pLDDT |
88.06
|
| Species |
Vibrio parahaemolyticus
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
231
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
72.3 | 42-142 | 101 | 1-41, 143-231 | 41 | 89 |
|
Model Sequence |
MQLKEKEMTDLAETSLEQQPTKKERNNADLSRPVFKRVLKVNSLQAQRVVERSFQRVSDSLFSIDVILRIIGEQDEIDQVESIIQEHIEKVSVDLDTATNQLQKLMEDNGIEGAPEYTSPNQYDIEINSPQVAQFAHLVRKLDNLMLLVDTLWLNSILTSKQRKDATYQWQQRLIKLAGRIIGIEKRARISAHSKGKKDEVEAAAPTQETTDEEIASEADNAESGEDEKAA
|
| Domain |
Bacteria
|
| Family |
Vibrionaceae
|
| Species (Full Name) |
Vibrio parahaemolyticus
|
| Gene |
pVPH1_0085
|
| PDB structures (whole Protein) |
-
|
A0A0C5GS28