A0A0D6JDJ9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	GumN family protein
Main knot	5₂ (56%)
Global pLDDT	83.27
Species	Candidatus Filomicrobium
UniProt	A0A0D6JDJ9
Structure Prediction Model	AlphaFold v4: A0A0D6JDJ9
PDB structures	-
Model length	357
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					85.8	30-281	252	1-29, 282-357	29	76

Model Sequence

MPAVRLFALLRARSALTRAAAGALAAIGLVFNLSAFDASAALANDKDAGTCSGRDILADVQAQDPASFTKIMTEAQATANDGAALWRVERDGKPDSYLFGTIHLTDERITELSDAVKSAIGKSRVVALEVADISPVATMQAIGAASDLVLFDNGHRLDQVISSEAFSLVEKKLEEAKLPTAMAHMYKPWVVSMILAVGPCERERVAGGKLVLDMVVSAYAQEKKIPVVGLETLQSQLEAAAAVPMDEQVQILRASLVHASRADDLRETVLRLYLQRKLGAVIPLQLYVAAKSGEVTDNLDGFREALITNRNRTMRTRALPLLAEGGAFIAVGGLHLVGEEGLVKLLRDAGYRVVPVE

Comments

ESM1

Categories voted by users:

Information

Protein name	GumN family protein
Main knot	3₁ (67%)
Global pLDDT	86.3
Species	Candidatus Filomicrobium
UniProt	A0A0D6JDJ9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	357
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					45.1	29-281	253	1-28, 282-357	28	76

Model Sequence

Comments

Domain	Bacteria
Family	Hyphomicrobiaceae
Species (Full Name)	Candidatus Filomicrobium marinum
Gene	YBN1229_v1_1129
PFAM codes	PF01963
InterPro codes	IPR002816
PDB structures (whole Protein)	-

A0A0D6JDJ9F1

AF4

Model Sequence

ESM1

Model Sequence