A0A0D8XYW0 | AlphaKnot 2.0

AF4

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Information

Protein name	Sodium-dependent serotonin transporter domain protein
Main knot	4₁ (68%)
Global pLDDT	84.25
Species	Bovine lungworm
UniProt	A0A0D8XYW0
Structure Prediction Model	AlphaFold v4: A0A0D8XYW0
PDB structures	-
Structure in AlphaLasso	A0A0D8XYW0: L₀
Model length	347
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.8	46-317	272	1-45, 318-347	45	30

Model Sequence

MIMQAKKFVLLQDLAPLMEAPVSAMRRRSSILRDRWATKMEFLLAVIGYAVDLGNIWRFPSVCYKHGGGAFLIPYLVMLLIGGLPMFYLELALGQFHRSGIGYGICFICTFIACFYNAIIAHAVYFIVISISQFEVPWSTCNNSWNTPRCTNTLNETLGKSGERLSTPSEDYEVLEIQSSSGFDDLGGVKPSMAVCLAFVFVVVYFALWKGPKSSGKMVWITATVPYVVLSILLIRGITLPGAARGIYYYLTPDFTRLNDPKVWSAAATQIFFSLGPGFGVLLALSSYNDFNNNCYRDAIITSTINCLTSFFSGFVIFSTLGYMSELTNKEINEVILNNELINPFVS

Comments

ESM1

Categories voted by users:

Information

Protein name	Sodium-dependent serotonin transporter domain protein
Main knot	4₁ (66%)
Global pLDDT	85.39
Species	Bovine lungworm
UniProt	A0A0D8XYW0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A0D8XYW0: L₀
Model length	347
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					69.1	51-317	267	1-50, 318-347	50	30

Model Sequence

Comments

Domain	Eukaryota
Family	Dictyocaulidae
Species (Full Name)	Dictyocaulus viviparus (Bovine lungworm)
Gene	DICVIV_06382
PFAM codes	PF00209
InterPro codes	IPR000175, IPR037272
PDB structures (whole Protein)	-

A0A0D8XYW0F1

AF4

Model Sequence

ESM1

Model Sequence