A0A0D8Y6Y5 | AlphaKnot 2.0

AF4

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Information

Protein name	Amino acid permease
Main knot	4₁ (75%)
Global pLDDT	74.96
Species	Bovine lungworm
UniProt	A0A0D8Y6Y5
Structure Prediction Model	AlphaFold v4: A0A0D8Y6Y5
PDB structures	-
Model length	364
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					80.8	44-314	271	1-43, 315-364	43	50

Model Sequence

MRASKFATALFRKKTFASDSILKSQLKRCLGVMDVMFLAVGQMIGAGIYVLAGSVVNHQTGPSIIISFICAGFAALMSAFSYAEFGARFPRAGSAYTYTYVGVGELWAFVIGWTVILEYMIGNAAVARSWSAYFDSLMNGSISNFTLQTIGTLSSFVFYSLTYANRDNLSNPQHVLPHRDGEGFFGRYPDVLSFLLICAVAVVVSLGSKSSAGVNTVFVLLNITVIMFVTIYGLTYANFSLWIGTDEKGKSRFFPFGIRGTLSGAATCFFAFIGFEILATAGEEAKNPKKTIPIATFGSLALVTFIYIMMSSALSLMIPYDQAIRPIVIQAVAFRTQHYSNQHCVSGVWCSKYNFIGDSEITNS

Comments

ESM1

Categories voted by users:

Information

Protein name	Amino acid permease
Main knot	4₁ (74%)
Global pLDDT	81.09
Species	Bovine lungworm
UniProt	A0A0D8Y6Y5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	364
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					86.3	45-314	270	1-44, 315-364	44	50

Model Sequence

Comments

Domain	Eukaryota
Family	Dictyocaulidae
Species (Full Name)	Dictyocaulus viviparus (Bovine lungworm)
Gene	DICVIV_01853
PFAM codes	PF13520
InterPro codes	IPR002293
PDB structures (whole Protein)	-

A0A0D8Y6Y5F1

AF4

Model Sequence

ESM1

Model Sequence