A0A0G4F8U9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (60%)
Global pLDDT	87.67
Species	Chromera velia
UniProt	A0A0G4F8U9
Structure Prediction Model	AlphaFold v4: A0A0G4F8U9
PDB structures	-
Model length	397
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					86.4	10-247	238	1-9, 248-397	9	150

Model Sequence

MMDDPQSWCTIESDPAVFTELCEAVGVKEVEFQELLGIDEESLAMLAAESQVFGLVFLFKWRPENDSREVAVFPPEDLFFARQVITNACATQAILSILMNRTDEIDIGPELSTFREMTVAGAFDPQMKGLAIGNLDTVRMAHNSFQKQSSFQIEHDKDDEKEDAFHFISYVPFRGKVWELDGLKEGPIEVAEVPQEWALGVPGSDALWLQALAPEIRRRIDRYQSVGAAEEAAGEGAGSGELRFTLLAITRDKRAPLKSEQLEKKYLLQRTLVKLISLGEDRSLEHEEEMDDDEAPDSVPSWEALPDEVPKLIALEEQTRKRLGEVSSALAEEEHKRESWKKDNARRRFDFVPFVLCALKHLGRRGELMDAFSEAKKTAEERKEAREQAKKTAGAAK

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (64%)
Global pLDDT	89.2
Species	Chromera velia
UniProt	A0A0G4F8U9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	397
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.8	11-247	237	1-10, 248-397	10	150

Model Sequence

Comments

Domain	Eukaryota
Family	Chromeraceae
Species (Full Name)	Chromera velia CCMP2878
Gene	Cvel_15616
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A0G4F8U9F1

AF4

Model Sequence

ESM1

Model Sequence