| Protein name |
Phytochrome
|
| Main knot |
41 (87%)
|
| Global pLDDT |
76.01
|
| Species |
Syntrichia princeps
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A0K0NQG7
|
| PDB structures |
-
|
| Model length |
1131
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
83.2 | 86-386 | 301 | 1-85, 387-1131 | 85 | 745 |
|
Model Sequence |
MAAAATTTTKMAYSSGSGMKTKHSVRVAQTTSDAKLQAVYEQSNDSGDSFDYSKSVAQAALALGQQQVPAQQVTAYLQRMQRGGLTQPFGCMLAVEEQTFRVIAYSENAPELLDVMPQAVPSLGQQEVLGIGTDARSLFTPSSASALERAAAAPDLSMVNPISVHSRASGKPFYAIVHRIDVGIVLDFEPVRVNDVIVSTAGALHSHKLAAKAISRLQALPGGDIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPSTDIPQASRFLFMKNRVRMIVDCCAPPVKVIQDKDLRQPISLAGSTLRAPHGCHAQYMGNMGSVASVTMAVIVNDQEDDFGEQQTRARRLWGLVVCHHTSPRTISFPLRSACEFLMQVFGLQLNMEVELENQKREKHILRTQTMLCDMLLRDAPIGIVSQCPNIMDLVKCDGAALYYGKRFWLLGITPSEEQIEEIANWLLEHHQDSTGLSTDSLADAGYPGANLLADAVCGMAAARITPSDFLFWFRSNTAKEIKWGGAKQEADDKDDGRKMAPRSSFNAFLEVMKRRSAPWEDIEMDAIHSLQLILRGSFQDIDDSDTKTMIHARLNDLKLQGMDELSTVANEMVRLIETATAPILAVDSNGFINGWNAKVAELTGLPVGDAMGRSLVQELVMDHSVGVVERLLYLALQGEEEQNIEIHLRTFGSQKGKGAVILIVNACSSRDVQENVVGVCFVGQDVTSQKQVHHKFTRISGDYKSIVQNPNPLIPPIFGSDEVGCCTEWSPSMEKLTGWKRDEVLGKMLVGEVFGTQLMCCRLKGQDAVTKFMIVLNNAMDGQDTDKHPFSFFDRQGKFVETLLSANKKTDADGYITGVFCFLHIASSELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMEETDLSDDQKQYMDTSAVCERQLRKILDDMDLESIEDGYLELETAEFELGSLMDAVVSQGMITSREKGLQLIRETPREINDMCLFGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKVVPTKKRLGGGFHVVHLEFRVAHPGSGLPEELVHEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVKYIRDTGKSYFLVNLELPLTVRDESGMLR
|
| Domain |
Eukaryota
|
| Family |
Pottiaceae
|
| Species (Full Name) |
Syntrichia princeps
|
| Gene |
PHY5D
|
| PFAM codes |
PF00360, PF00512, PF00989, PF01590, PF02518, PF08446
|
| InterPro codes |
 IPR000014, IPR000700, IPR001294, IPR003018, IPR003594, IPR003661, IPR005467, IPR012129, IPR013515, IPR013516, IPR013654, IPR013767, IPR016132, IPR029016, IPR035965, IPR036890, IPR043150, IPR044767
|
| PDB structures (whole Protein) |
-
|
A0A0K0NQG7