A0A0K2P4V3 | AlphaKnot 2.0

AF4

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Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (83%)
Global pLDDT	94.25
Species	Cronobacter dublinensis subsp
UniProt	A0A0K2P4V3
Structure Prediction Model	AlphaFold v4: A0A0K2P4V3
PDB structures	-
Model length	257
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.6	86-131	46	1-85, 132-257	85	126

Model Sequence

MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIDSWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNEKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQAKLLAEFKTEHAQQQHRHDGTGDA

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (87%)
Global pLDDT	92.66
Species	Cronobacter dublinensis subsp
UniProt	A0A0K2P4V3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	257
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.9	86-131	46	1-85, 132-257	85	126

Model Sequence

Comments

Domain	Bacteria
Family	Enterobacteriaceae
Species (Full Name)	Cronobacter dublinensis subsp. dublinensis LMG 23823
Gene	trmD AFK67_15570
PFAM codes	PF01746
InterPro codes	IPR002649, IPR016009, IPR023148, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A0K2P4V3F1

AF4

Model Sequence

ESM1

Model Sequence