| Protein name |
Plasmid-related protein
|
| Main knot |
31 (81%)
|
| Global pLDDT |
90.42
|
| Species |
Vibrio alginolyticus
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A0N9DYL6
|
| PDB structures |
-
|
| Model length |
195
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
95.2 | 20-120 | 101 | 1-19, 121-195 | 19 | 75 |
|
Model Sequence |
MAQAKPNYSKPIFEQSFTINSLQAQRVVDRVFRRTVSALYGIDVILRIIGDENEIDEVEQIISQLIEDCAKAVDNEQARLDKLMESNGIDEVPDYTDPITFNAKISSPQVGQFVGLVRKLDALMISMDTLWLSSVLSNKQRVDGNYAWQQRIIKLARRIIDIEIRARKSAQAKGKEAEVEQAVPSTDDDITEERV
|
| Protein name |
Plasmid-related protein
|
| Main knot |
31 (84%)
|
| Global pLDDT |
91.02
|
| Species |
Vibrio alginolyticus
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
195
|
| ESM generation time |
2023-06-24: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
76.7 | 20-120 | 101 | 1-19, 121-195 | 19 | 75 |
|
Model Sequence |
MAQAKPNYSKPIFEQSFTINSLQAQRVVDRVFRRTVSALYGIDVILRIIGDENEIDEVEQIISQLIEDCAKAVDNEQARLDKLMESNGIDEVPDYTDPITFNAKISSPQVGQFVGLVRKLDALMISMDTLWLSSVLSNKQRVDGNYAWQQRIIKLARRIIDIEIRARKSAQAKGKEAEVEQAVPSTDDDITEERV
|
| Domain |
Bacteria
|
| Family |
Vibrionaceae
|
| Species (Full Name) |
Vibrio alginolyticus
|
| Gene |
s063 ICEValHN396_049
|
| PDB structures (whole Protein) |
-
|
A0A0N9DYL6