A0A0Q8ABG0 | AlphaKnot 2.0

AF4

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Information

Protein name	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase)
Main knot	3₁ (94%)
Global pLDDT	87.84
Species	Mesorhizobium sp
UniProt	A0A0Q8ABG0
Structure Prediction Model	AlphaFold v4: A0A0Q8ABG0
PDB structures	-
Model length	293
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.2	89-143	55	1-88, 144-293	88	150

Model Sequence

MPSSQDQQKTAVAGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASHADHVIDATRVFGDLASAIADLNFVFATTARERDGFKRVAGPVEAGRTLRSRSIAGQKTGILFGRERFGLNNEEVGLADEIVTFPVDPGFASLNIAQAVLLMSYEWMKSGLEDETATNFSTPEMPPATKEKLHGLFAHLEAALDARGYFRPAAKKPKMVDNLRAVLTRAGFADPELKVLRGVVASLDYFSPKQPRGAGYPDRKAEVDRALHAEGDDKAESGHRRDQGAGND

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase)
Main knot	3₁ (95%)
Global pLDDT	86.13
Species	Mesorhizobium sp
UniProt	A0A0Q8ABG0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	293
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.6	89-143	55	1-88, 144-293	88	150

Model Sequence

Comments

Domain	Bacteria
Family	Phyllobacteriaceae
Species (Full Name)	Mesorhizobium sp. Root157
Gene	trmJ ASD64_13205
PFAM codes	PF00588
InterPro codes	IPR001537, IPR004384, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A0Q8ABG0F1

AF4

Model Sequence

ESM1

Model Sequence