A0A0S7KRR4 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	YLAT1
Main knot	4₁ (83%)
Global pLDDT	80.48
Species	blackstripe livebearer
UniProt	A0A0S7KRR4
Structure Prediction Model	AlphaFold v4: A0A0S7KRR4
PDB structures	-
Structure in AlphaLasso	A0A0S7KRR4: L_+2N
Model length	311
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.1	49-278	230	1-48, 279-311	48	33

Model Sequence

MATYIPSPMEEGTNGGPTSAKSENAEESMKLKKEISLLNGVCLIVGNMIGSGIFVSPKGVLIHSASYGLSLVVWTIGGIFSIFGALCYAELGTTITKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFSNYMVQPIFPTCIAPYVANRFLAAACICLLTFVNCAYVKWGTRVQDFFTYAKVIALIAVIITGLVKIGQGYTQNFDGMFDGSSQDPGHIALALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIAISMPIVTIIYLLTNAAYYVVLDMPSLLASDAVAVVRSKQSPERDKSHRC

Comments

ESM1

Categories voted by users:

Information

Protein name	YLAT1
Main knot	4₁ (78%)
Global pLDDT	91.15
Species	blackstripe livebearer
UniProt	A0A0S7KRR4
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A0S7KRR4: L_+2N
Model length	311
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					83.9	49-278	230	1-48, 279-311	48	33

Model Sequence

Comments

Domain	Eukaryota
Family	Poeciliidae
Species (Full Name)	Poeciliopsis prolifica (blackstripe livebearer)
Gene	YLAT1
PFAM codes	PF13520
InterPro codes	IPR002293
PDB structures (whole Protein)	-

A0A0S7KRR4F1

AF4

Model Sequence

ESM1

Model Sequence