A0A0U2NYJ7 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	23S rRNA (Guanosine(2251)-2'-O)-methyltransferase RlmB (RNA methyltransferase)
Main knot	3₁ (90%)
Global pLDDT	85.44
Species	Kocuria flava
UniProt	A0A0U2NYJ7
Structure Prediction Model	AlphaFold v4: A0A0U2NYJ7
PDB structures	-
Model length	324
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.9	251-293	43	1-250, 294-324	250	31

Model Sequence

MSAPRRPGAIRKKKKGPLVGTGGHGRKALEGKGPTPKAEDRPYHKAHKQKKAAERRQQPAGARSRNPRGKVHEDLVTGRNSVLEALRAEIPAKALYAAARLDVDDRVREILQTCAERGIPVLEASKAELDRLTLDAVHQGVALQVPPYEYRDAVETGRTLLAQWQKRHVRRPPLLVALDGITDPRNLGAIIRSVSAFSGSAVVVPERRSVGVTATAWKTSAGAAARVPVTRAANLNRALEELKAMGYFVVGLDGDGDVDLPGLELATEPLVVVVGSEGKGLSRLVAENCDQIVSIPIDSAMESLNASMAVGIALYEVSRRRAGS

Comments

ESM1

Categories voted by users:

Information

Protein name	23S rRNA (Guanosine(2251)-2'-O)-methyltransferase RlmB (RNA methyltransferase)
Main knot	3₁ (84%)
Global pLDDT	88.04
Species	Kocuria flava
UniProt	A0A0U2NYJ7
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	324
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					65.3	251-293	43	1-250, 294-324	250	31

Model Sequence

Comments

Domain	Bacteria
Family	Micrococcaceae
Species (Full Name)	Kocuria flava
Gene	AS188_06375 KFL01_16660
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR004441, IPR013123, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

A0A0U2NYJ7F1

AF4

Model Sequence

ESM1

Model Sequence