A0A0V1EHM6 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (69%)
Global pLDDT	74.94
Species	Parasitic roundworm
UniProt	A0A0V1EHM6
Structure Prediction Model	AlphaFold v4: A0A0V1EHM6
PDB structures	-
Structure in AlphaLasso	A0A0V1EHM6: L₀
Model length	387
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					83.5	11-240	230	1-10, 241-387	10	147

Model Sequence

MQKQSEEESWAELESDPGLFTLLIEDFGVSGVAVEEIYDLQSPLNRRTYGFIFLFKWLGEHRRARRQLWDFSTQSEHNVANHRLFFAKQKVSNSCATYALLNILLNLNDIAIGPLLKNIKESTNGLDPESSGIIVANTAELARCHNKHARPDAVRELNKQTNGPVRRSVVYSSSKQARFHFSSYIQFDGHLYELDSLKDFPIDLGEISANTAWTDYFQKIVLERFSKSNVHSNEIRYNLMAFVGSKLTTDKKLGVDERRRRLLLFCESSFKSTKCKDSKCSCNSTPNGINIEQVLSQSVVNNWFFQRNRKFINLKLTVSSSQMVVFKVCITKLIALLNYIDSGIAQVKMEINELKERKEQFLVDDARRVHDYEPFIRTFLTAMAEKK

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (82%)
Global pLDDT	75.97
Species	Parasitic roundworm
UniProt	A0A0V1EHM6
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A0V1EHM6: L₀
Model length	387
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.2	11-240	230	1-10, 241-387	10	147

Model Sequence

Comments

Domain	Eukaryota
Family	Trichinellidae
Species (Full Name)	Trichinella pseudospiralis (Parasitic roundworm)
Gene	calypso T4A_5282
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A0V1EHM6F1

AF4

Model Sequence

ESM1

Model Sequence