A0A167CSY9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	rRNA methyltransferase
Main knot	3₁ (84%)
Global pLDDT	94.0
Species	Paenibacillus crassostreae
UniProt	A0A167CSY9
Structure Prediction Model	AlphaFold v4: A0A167CSY9
PDB structures	-
Model length	263
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					92.9	189-230	42	1-188, 231-263	188	33

Model Sequence

MDITSLSNTRVKEWAQLLEKKHRDRNNKFVVEGVHLVLEALQSGANIECIAYDMDKGIPSELKQVSSNDAEWIGVSSAIIGKCTDTVTPQPVFAVVRKQSVDLEQLLSIKNSLVMVLDNVQDPGNVGTIIRSADAAGADGVILGHGCADLYNPKTIRSTMGSFFHLPVVEGQLLEILPQAKQSGARLVSTSLQAEYTCYEYDFSATTWLLVGNEAQGVSEPVKKLVDDSLIIPMRGQAESLNVGMASSVLMFEVMRQRHYRSK

Comments

ESM1

Categories voted by users:

Information

Protein name	rRNA methyltransferase
Main knot	3₁ (80%)
Global pLDDT	95.94
Species	Paenibacillus crassostreae
UniProt	A0A167CSY9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	263
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					96.3	30-230	201	1-29, 231-263	29	33

Model Sequence

Comments

Domain	Bacteria
Family	Paenibacillaceae
Species (Full Name)	Paenibacillus crassostreae
Gene	PNBC_13620
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR013123, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

A0A167CSY9F1

AF4

Model Sequence

ESM1

Model Sequence