A0A1B1ZMV4 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	RNA methyltransferase
Main knot	3₁ (94%)
Global pLDDT	84.45
Species	Pseudonocardia sp
UniProt	A0A1B1ZMV4
Structure Prediction Model	AlphaFold v4: A0A1B1ZMV4
PDB structures	-
Model length	325
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.3	251-293	43	1-250, 294-325	250	32

Model Sequence

MAGNSKRRGAIRKDGTKKGMVIGSGGQPRRALRGKGPTPPGELRPGHPKQKAAARRAAQTDQQQRRRPVAGRRGDGDGPETVLGRNPVVECLRAGVPSTALYVATGVSADERVTEAVALAAEQGISILEVPRNDLDRISGGALHQGLALQVPPYSYAHPDDLLEAAAHTNRPALAVALDGVTDPRNLGAVVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARVPVARVTNLTRTLREYASAGLMVAGLAADGDVSLDEFDLATGPLVVVTGSEGKGLSRLVRETCDVTVSIPLAGAVESLNASVATGVVLAEVARRRRAAR

Comments

ESM1

Categories voted by users:

Information

Protein name	RNA methyltransferase
Main knot	3₁ (86%)
Global pLDDT	88.57
Species	Pseudonocardia sp
UniProt	A0A1B1ZMV4
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	325
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					66.0	251-293	43	1-250, 294-325	250	32

Model Sequence

Comments

Domain	Bacteria
Family	Pseudonocardiaceae
Species (Full Name)	Pseudonocardia sp. HH130630-07
Gene	AFB00_13140
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR004441, IPR013123, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

A0A1B1ZMV4F1

AF4

Model Sequence

ESM1

Model Sequence