A0A1C3PCV9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (84%)
Global pLDDT	84.51
Species	Candidatus Frankia
UniProt	A0A1C3PCV9
Structure Prediction Model	AlphaFold v4: A0A1C3PCV9
PDB structures	-
Model length	283
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.8	88-133	46	1-87, 134-283	87	150

Model Sequence

MRVDIVTIFPAYLSPLELSLVGRARARGILDVHLHDLRQWANDVHRTVDDAPYGGGPGMVMRPEPWWAALTEICALGAADGRRPRIIVPTPVGRPFTQAYAAGLADEQWLVFCCGRYEGIDARVIDEWADDEISIGDYVLAGGEVATLVVLEAVTRLLPGVVGNAESVVDDSFASGLLEAPVYTRPPVWGDHEVPAVLRSGDHAAIGRWRREEALRRTAHRRPDLLGRLDRPAGDDLAGADPAGDDLAECDRIPTGDDRVSRLEHRVEHSGTGETDSDARVAQ

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (86%)
Global pLDDT	86.45
Species	Candidatus Frankia
UniProt	A0A1C3PCV9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	283
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.3	88-133	46	1-87, 134-283	87	150

Model Sequence

Comments

Domain	Bacteria
Family	Frankiaceae
Species (Full Name)	Candidatus Frankia californiensis
Gene	trmD FDG2_5392
PFAM codes	PF01746
InterPro codes	IPR002649, IPR016009, IPR023148, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A1C3PCV9F1

AF4

Model Sequence

ESM1

Model Sequence