A0A1D2SBJ8 | AlphaKnot 2.0

AF4

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Information

Protein name	rRNA methyltransferase
Main knot	3₁ (79%)
Global pLDDT	91.27
Species	Comamonas sp
UniProt	A0A1D2SBJ8
Structure Prediction Model	AlphaFold v4: A0A1D2SBJ8
PDB structures	-
Model length	257
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					84.0	77-147	71	1-76, 148-257	76	110

Model Sequence

MRTRFILIQTSHPGNVGAAARAIKTMGFDDLVLVAPRWPNVLRREIAIQRASGATDVLERARIVATLDEALDGMHHLCATAMTPRDFGPPTRSPRAHFDMLLKTQLNAQCSQAPNGNLAEESGVAFLFGSERFGMANSDVYRCHVALSIPTAPEFGSLNLAAAVQLVAYEWRQALGGFAVHDAASHGTPADARQMAGMLAHWQQALVEIGFLDPAAPKKLMPRLNQLFNRASPSEEDIHILRGIAKTMMTLGARQPH

Comments

ESM1

Categories voted by users:

Information

Protein name	rRNA methyltransferase
Main knot	3₁ (77%)
Global pLDDT	90.9
Species	Comamonas sp
UniProt	A0A1D2SBJ8
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	257
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.6	1-217	217	218-257	0	40

Model Sequence

Comments

Domain	Bacteria
Family	Comamonadaceae
Species (Full Name)	Comamonas sp. SCN 65-56
Gene	ABS45_01790
PFAM codes	PF00588
InterPro codes	IPR001537, IPR004384, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A1D2SBJ8F1

AF4

Model Sequence

ESM1

Model Sequence