A0A1D6GYP5F1

Glutamate receptor
AF4
Categories voted by users:
Information
Protein name
Glutamate receptor
Main knot
52 (94%)
Global pLDDT
86.19
Species
Maize
UniProt
Structure Prediction Model
AlphaFold v4:  A0A1D6GYP5
PDB structures
-
Model length
901
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
83.3 557-823 267 1-556, 824-901 556 78
Model Sequence
MKIAFLMSLVLSLFLLPNGICKSLVARPSVVNIGSILRLNSTIGGVSDVAIRAAVEDINSDPTVLNGTTLHVETRDTNCNDGFLGMVQALQFMETDVIAIIGPQCSAIAHIISYVANELQVPLMSFASDATLSSIQFPFFVRTMPSDLYQMAAVAAVVDYYQWKIVTAIYVDDDYGRNGIAALDDELTARRCKISYKTGFRSNAKKSELLSLLVTVSNMESRVIILHTGSEPGLKLLSLANGLNMMGNGYVWIATDWLSAYLDANSSVSAETVNGMQGVLTVRPHTPKSNMKRNLVSKWSSLSKKYNHSDLRTSAYGFYVYDSVWTVARALDAFFDDGGRISFTNDSRLRDVTGGTLHLEAMSVFDMGNKLLDKIRNVNFAGVSGQVQFNAQFELIHPAYDIISIIGNGMRTIGFWSNYTRLLSTTPPEDLYSKPPNTSLANQQLYDVIWPGETAQKPRGWAFPYNAKELKIGVPNRFSFKEFVSKDNGTGSMKGYCIDVFTQALTLLPYPVTYRFIPFGNGTENPHFDQLAQMVADNDFDAAIGDIEITMSRTKIVDFTQPFIESGLVILAPIKKHITNSWAFLQPFTLGMWCVTGLSFLVVGVVIWILEHRINDDFRGSPWQQLITIVWFSFSTLFFAHREKTMSTLGRGVLIIWLFVVLIIQSSYTASLTSILTVQQLDTSIRGLDDLKHSDYPIGFQVGSFVKEYMIKELNISQSRLKALGSPEEYAENLKLGPKKGGVMAIVDERPYVELFLSTYCKIAVAGQDFTSGGWGFAFPRDSPLQVDLSTAILTLSEDGELQRIHDKWLKTGDCSSDNTEFVDSNQLRLESFMGLFLICGAACVLALLIYFGITLRQYLRHEQPGSAISADSGSSTSKRSLRKFISFVDERQRSPKKNGP
Comments
AF1-Unsure
Categories voted by users:
Information
Protein name
Glutamate receptor
Main knot
52 (95%)
Knot fingerprint
K 52
Global pLDDT
86.19
Species
Maize
UniProt
Structure Prediction Model
AlphaFold v1:  A0A1D6GYP5
PDB structures
-
Model length
901
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
83.0 570-820 251 1-569, 821-901 569 81
Model Sequence
MKIAFLMSLVLSLFLLPNGICKSLVARPSVVNIGSILRLNSTIGGVSDVAIRAAVEDINSDPTVLNGTTLHVETRDTNCNDGFLGMVQALQFMETDVIAIIGPQCSAIAHIISYVANELQVPLMSFASDATLSSIQFPFFVRTMPSDLYQMAAVAAVVDYYQWKIVTAIYVDDDYGRNGIAALDDELTARRCKISYKTGFRSNAKKSELLSLLVTVSNMESRVIILHTGSEPGLKLLSLANGLNMMGNGYVWIATDWLSAYLDANSSVSAETVNGMQGVLTVRPHTPKSNMKRNLVSKWSSLSKKYNHSDLRTSAYGFYVYDSVWTVARALDAFFDDGGRISFTNDSRLRDVTGGTLHLEAMSVFDMGNKLLDKIRNVNFAGVSGQVQFNAQFELIHPAYDIISIIGNGMRTIGFWSNYTRLLSTTPPEDLYSKPPNTSLANQQLYDVIWPGETAQKPRGWAFPYNAKELKIGVPNRFSFKEFVSKDNGTGSMKGYCIDVFTQALTLLPYPVTYRFIPFGNGTENPHFDQLAQMVADNDFDAAIGDIEITMSRTKIVDFTQPFIESGLVILAPIKKHITNSWAFLQPFTLGMWCVTGLSFLVVGVVIWILEHRINDDFRGSPWQQLITIVWFSFSTLFFAHREKTMSTLGRGVLIIWLFVVLIIQSSYTASLTSILTVQQLDTSIRGLDDLKHSDYPIGFQVGSFVKEYMIKELNISQSRLKALGSPEEYAENLKLGPKKGGVMAIVDERPYVELFLSTYCKIAVAGQDFTSGGWGFAFPRDSPLQVDLSTAILTLSEDGELQRIHDKWLKTGDCSSDNTEFVDSNQLRLESFMGLFLICGAACVLALLIYFGITLRQYLRHEQPGSAISADSGSSTSKRSLRKFISFVDERQRSPKKNGP
Comments
Domain Eukaryota
Family Poaceae
Species (Full Name) Zea mays
PFAM codes  PF00060,  PF00497,  PF01094
InterPro codes  IPR001320,  IPR001638,  IPR001828,  IPR017103,  IPR028082,  IPR044440
PDB structures (whole Protein) -
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