A0A1F5DCT1F1

Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
AF4
Categories voted by users:
Information
Protein name
Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot
31 (86%)
Global pLDDT
95.79
Species
Candidatus Bathyarchaeota
UniProt
Structure Prediction Model
AlphaFold v4:  A0A1F5DCT1
PDB structures
-
Model length
232
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.1 151-199 49 1-150, 200-232 150 33
Model Sequence
MLTLILAESSIERIPKAIVNDPSVISDAKRRRKNPEQLILDRSYHHKAINRLSNPEKRGRPDIIHITLLNCLGSPLNVTGRLTTYVHTIEDLIIEVSSRTRIPRNSERFKGILEQLFESHRVPTTGKPLLQLRKSSLKELIRKVSPSYVGALTTQGNYENLTNLGHIIVNQKKPVLIIGGFSKGHFTKETLKLADQTISIFPKGLESWTVASKVIFTYEQALEFNDICNSNP
Comments
ESM1
Categories voted by users:
Information
Protein name
Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot
31 (81%)
Global pLDDT
93.66
Species
Candidatus Bathyarchaeota
UniProt
Structure Prediction Model
PDB structures
-
Model length
232
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.9 151-199 49 1-150, 200-232 150 33
Model Sequence
MLTLILAESSIERIPKAIVNDPSVISDAKRRRKNPEQLILDRSYHHKAINRLSNPEKRGRPDIIHITLLNCLGSPLNVTGRLTTYVHTIEDLIIEVSSRTRIPRNSERFKGILEQLFESHRVPTTGKPLLQLRKSSLKELIRKVSPSYVGALTTQGNYENLTNLGHIIVNQKKPVLIIGGFSKGHFTKETLKLADQTISIFPKGLESWTVASKVIFTYEQALEFNDICNSNP
Comments
Domain Archaea
Family unclassified Candidatus Bathyarchaeota
Species (Full Name) Candidatus Bathyarchaeota archaeon RBG_13_38_9
Gene nep1 A3K80_02630
PFAM codes  PF03587
InterPro codes  IPR005304,  IPR023503,  IPR029026,  IPR029028
PDB structures (whole Protein) -
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