A0A1F9I4Z0F1

Methionine synthase (EC 2.1.1.13) (5-methyltetrahydrofolate--homocysteine methyltransferase)
AF6
Categories voted by users:
Information
Protein name
Methionine synthase (EC 2.1.1.13) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Main knot
84 (52%)
Global pLDDT
86.94
Species
Deltaproteobacteria bacterium
UniProt
Structure Prediction Model
AlphaFold v6:  A0A1F9I4Z0
PDB structures
-
Model length
1235
AlphaFold deposition date
2026-06-01
AlphaKnot deposition date
2026-07-09
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
84.47 252-908 657 1-251, 909-1235 251 327 Knot
Model Sequence
MGETEKIFRQLLSERILVLDGAMGTMIQALKCDEKDFRGERFANHGRPLKGCNDLLSMTQPDAVEKIHRDYLEAGVDIIETNTFNANAVSLSDYGLEAEAYALNVAAARVARQAVDRVARRTPDKPRFVAGSIGPTNRTASLSPDVNDPAFRAVTFDQLVQAYYDQIRGLVDGGVDFLLPETTFDTLNLKACLFAIAKLFEERRIRLPVLASVTITDRSGRTLSGQTLEAFLTSISHADLIAVGINCAFGPQQMSPFVEELARLSPLPTFAYPNAGLPNEFGGYDMGPEDLGRALGNWAKEGWLNLVGGCCGTTPEHIAAIAEAVRDARPRTPPEPELLTHLSGLERLTIRPESNFIMIGERANVAGSRRFARLIREEKYEEALAIAREQIDGGANLIDVNMDEAMLDSVQAMTTFLNYIAAEPEIARVPVMIDSSNFDVIEAGLKCVQGKAVVNSISLKEGEEEFKRRARLIKRLGAAVVVMAFDEEGQAATIEHRVRICQRAHRILTEEIGFDEGDIIFDTNVLIVATGIEEHNDYAVNFIEAAKQIKALFPRGHISGGVSNVSFSFRGNDAVREAMHAAFLYHAIQAGMDMGIVNAGQLAVYEEIPKDLLERVEDVLFNRRPAATERLLEIAEQVRGTGKAAEQEAAWREESVEHRLSHAIVKGVVDYIERDLGEALQKYPRPLEIIEGPLMDGINVVGDLFGEGKMFLPQVVKSARVMKRAVAYLTPLMEEEKKAALKNAQRAKVILATVKGDVHDIGKNIVGVVLGCNNYEVIDLGVMVAADRIIETAIKEQADIVGLSGLITPSLDEMVHVAKEMERRGLKVPLLIGGATTSKRHTAVKIAPVYRHETVHVIDASRAVPVVGGLCSPDSRKALDKKNRAEQEEMRRQYESRAVAELLTYEEAVRRKMHIEWDDSHISIPEFIGRKVLADYPLSELVPYIDWSPFFHTWEMRGRYPDLLSDPVRGPAARELFANGQELLREIVAKRPLVARAVYGFYPANSEGDDIILYTDAARTRELTRFHTLRQQKESQRAKPQFALADFIAPRESGIVDYIGAFAVTAGHGTEELARRFEETHDQYNAIMAKALADRLAEAFAEWLHKRVRAEWGYGKDENLGSKELIGESYRGIRPAPGYPACPDHTEKRILFDLLEVEDATGITLTENFAMLPAASICGLYFAHKESRYFAVSAIGRDQVEAYAARKGMLVPEIERWLSPVLGYDPSRFSKAASP
Comments
AF4
Categories voted by users:
Information
Protein name
Methionine synthase (EC 2.1.1.13) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Main knot
84 (45%)
Global pLDDT
87.16
Species
Deltaproteobacteria bacterium
UniProt
Structure Prediction Model
AlphaFold v4:  A0A1F9I4Z0
PDB structures
-
Model length
1235
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
84.5 250-911 662 1-249, 912-1235 249 324
Model Sequence
MGETEKIFRQLLSERILVLDGAMGTMIQALKCDEKDFRGERFANHGRPLKGCNDLLSMTQPDAVEKIHRDYLEAGVDIIETNTFNANAVSLSDYGLEAEAYALNVAAARVARQAVDRVARRTPDKPRFVAGSIGPTNRTASLSPDVNDPAFRAVTFDQLVQAYYDQIRGLVDGGVDFLLPETTFDTLNLKACLFAIAKLFEERRIRLPVLASVTITDRSGRTLSGQTLEAFLTSISHADLIAVGINCAFGPQQMSPFVEELARLSPLPTFAYPNAGLPNEFGGYDMGPEDLGRALGNWAKEGWLNLVGGCCGTTPEHIAAIAEAVRDARPRTPPEPELLTHLSGLERLTIRPESNFIMIGERANVAGSRRFARLIREEKYEEALAIAREQIDGGANLIDVNMDEAMLDSVQAMTTFLNYIAAEPEIARVPVMIDSSNFDVIEAGLKCVQGKAVVNSISLKEGEEEFKRRARLIKRLGAAVVVMAFDEEGQAATIEHRVRICQRAHRILTEEIGFDEGDIIFDTNVLIVATGIEEHNDYAVNFIEAAKQIKALFPRGHISGGVSNVSFSFRGNDAVREAMHAAFLYHAIQAGMDMGIVNAGQLAVYEEIPKDLLERVEDVLFNRRPAATERLLEIAEQVRGTGKAAEQEAAWREESVEHRLSHAIVKGVVDYIERDLGEALQKYPRPLEIIEGPLMDGINVVGDLFGEGKMFLPQVVKSARVMKRAVAYLTPLMEEEKKAALKNAQRAKVILATVKGDVHDIGKNIVGVVLGCNNYEVIDLGVMVAADRIIETAIKEQADIVGLSGLITPSLDEMVHVAKEMERRGLKVPLLIGGATTSKRHTAVKIAPVYRHETVHVIDASRAVPVVGGLCSPDSRKALDKKNRAEQEEMRRQYESRAVAELLTYEEAVRRKMHIEWDDSHISIPEFIGRKVLADYPLSELVPYIDWSPFFHTWEMRGRYPDLLSDPVRGPAARELFANGQELLREIVAKRPLVARAVYGFYPANSEGDDIILYTDAARTRELTRFHTLRQQKESQRAKPQFALADFIAPRESGIVDYIGAFAVTAGHGTEELARRFEETHDQYNAIMAKALADRLAEAFAEWLHKRVRAEWGYGKDENLGSKELIGESYRGIRPAPGYPACPDHTEKRILFDLLEVEDATGITLTENFAMLPAASICGLYFAHKESRYFAVSAIGRDQVEAYAARKGMLVPEIERWLSPVLGYDPSRFSKAASP
Comments
Domain Bacteria
Family unclassified Deltaproteobacteria
Species (Full Name) Deltaproteobacteria bacterium RIFCSPLOWO2_02_56_12
Gene A2W66_06315
PFAM codes  PF00809,  PF02310,  PF02574,  PF02607,  PF02965
InterPro codes  IPR000489,  IPR003726,  IPR003759,  IPR004223,  IPR006158,  IPR011005,  IPR011822,  IPR033706,  IPR036589,  IPR036594,  IPR036724,  IPR037010
PDB structures (whole Protein) -
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