| Protein name |
Plasmid-related protein
|
| Main knot |
31 (93%)
|
| Global pLDDT |
76.94
|
| Species |
Gammaproteobacteria bacterium
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A1G0KRP6
|
| PDB structures |
-
|
| Model length |
260
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
96.0 | 26-126 | 101 | 1-25, 127-260 | 25 | 134 |
|
Model Sequence |
MMNTTTSKRNSGGSTRPVIQRKITLSSYQAQQTFRRSFDPTARSFYLLSIVLRAIAHDDQAREVEAMVDVQLDEMQERLTAEALRLERMCEDSGIDPTPTFTRPQEIDAEISTPRINRYLGLINQLDRVVGLISLLWLSGVRSDSQYSAECYLWQRNLLRLSNRIREIANRAVSAANRVKSGQDGEPVEGQETEHDITPVPIDPEGHDDELASGAEPAAGKRGRKKKAPAAPAADEAVADEVADETAPGEAEAESIADAA
|
| Protein name |
Plasmid-related protein
|
| Main knot |
31 (84%)
|
| Global pLDDT |
83.73
|
| Species |
Gammaproteobacteria bacterium
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
260
|
| ESM generation time |
2023-06-24: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
75.3 | 26-126 | 101 | 1-25, 127-260 | 25 | 134 |
|
Model Sequence |
MMNTTTSKRNSGGSTRPVIQRKITLSSYQAQQTFRRSFDPTARSFYLLSIVLRAIAHDDQAREVEAMVDVQLDEMQERLTAEALRLERMCEDSGIDPTPTFTRPQEIDAEISTPRINRYLGLINQLDRVVGLISLLWLSGVRSDSQYSAECYLWQRNLLRLSNRIREIANRAVSAANRVKSGQDGEPVEGQETEHDITPVPIDPEGHDDELASGAEPAAGKRGRKKKAPAAPAADEAVADEVADETAPGEAEAESIADAA
|
| Domain |
Bacteria
|
| Family |
unclassified Gammaproteobacteria
|
| Species (Full Name) |
Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37
|
| Gene |
A2514_15950
|
| PDB structures (whole Protein) |
-
|
A0A1G0KRP6