A0A1H9H1E3 | AlphaKnot 2.0

AF6

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Information

Protein name	GGDEF domain-containing protein
Main knot	8₃ (40%)
Global pLDDT	90.87
Species	Lachnospiraceae bacterium
UniProt	A0A1H9H1E3
Structure Prediction Model	AlphaFold v6: A0A1H9H1E3
PDB structures	-
Model length	481
AlphaFold deposition date	2026-06-01
AlphaKnot deposition date	2026-07-09

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.87	104-446	343	1-103, 447-481	103	35		Knot

Model Sequence

MKTTGKKLLTYIQADKDREENILKYQQLLGTAFNNYSTIKLSMNLFTLYERIADLLDTQSPDDDMMQVRDEMEEYINTLSFSLRTVFVDKKPEDTLIADINSIRDKITDDMKLLTFYVDAYEIYEYILNRKEPKFREDDLTEIDTEELADSMFNFVFAEDDKLLINTRIQDLVAQLPVRMTKNHFFDIISNSLMIYRGGEKKSVDGFIESIRDAALLDEPAGITDRYASLYDFYKELKDQNYESIDKETIDKLNEKISENADKISSICSDYMMMTEVINDILVVLYTEGMKDNSYLDNKYDTASDIISSIVTATDIYEASAGFDSLFVKLEGAQEDAYENLASLNSGLDDLYNTYYEMYENEGIKANFDKLIKVDRLTSTSLFMDLEDNGLSVVVDEADDIYINEEKSLLIEDLTAHFGKLGRSERRSIMAKVMSLMPVFFNTKQEIKEYFEYALSSCSDLAELTACKELIDDLIIYDSRD

Comments

AF4

Categories voted by users:

Information

Protein name	GGDEF domain-containing protein
Main knot	8₃ (44%)
Global pLDDT	90.98
Species	Lachnospiraceae bacterium
UniProt	A0A1H9H1E3
Structure Prediction Model	AlphaFold v4: A0A1H9H1E3
PDB structures	-
Model length	481
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.2	33-468	436	1-32, 469-481	32	13

Model Sequence

Comments

Domain	Bacteria
Family	Lachnospiraceae
Species (Full Name)	Lachnospiraceae bacterium NE2001
Gene	SAMN02910369_02020
PDB structures (whole Protein)	-

A0A1H9H1E3F1

AF6

Model Sequence

AF4

Model Sequence