A0A1I8B0S5 | AlphaKnot 2.0

AF4

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Information

Protein name	Aa_trans domain-containing protein
Main knot	4₁ (90%)
Global pLDDT	74.75
Species	Root-knot nematode worm
UniProt	A0A1I8B0S5
Structure Prediction Model	AlphaFold v4: A0A1I8B0S5
PDB structures	-
Structure in AlphaLasso	A0A1I8B0S5: L_+1C
Model length	383
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					83.6	51-225	175	1-50, 226-383	50	158

Model Sequence

MSSETTNFEKHPPFIINGNNRVCDEKDIEQKSQEKSKKNGLGWFVACLFVVSDMAGGGLVALPTAMINSGFWPGILLSFLMTLIFMFTSKALGRNWVILRRRWPVYRKHCRQPYPEMGKRALGKWMGLAAVVAVTTTSLAVILICIGSLLDFGECRQHHSMPEFRITNFFLAVGTLLFAYGGHPAFPTIQHDMRKPEEFEKSSSLAFSILFCMYTPVCIIGYMSYGDSLRESVINSLQHVWIQQIVNLMITLHLIFTIIIVNNPLNQKVEEVFNIPHDFGWKRVVARTGMMALALFVAETVPSFGPLLDLIVFGFCGGLAATYSAIRSLSVTHFVPPCYLSSIANGKEPNAGGHVNCCGKYQNISVFGLKEEFCSPSNLNFYS

Comments

ESM1

Categories voted by users:

Information

Protein name	Aa_trans domain-containing protein
Main knot	4₁ (77%)
Global pLDDT	75.27
Species	Root-knot nematode worm
UniProt	A0A1I8B0S5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A1I8B0S5: L_+1C
Model length	383
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					62.9	51-225	175	1-50, 226-383	50	158

Model Sequence

Comments

Domain	Eukaryota
Family	Meloidogynidae
Species (Full Name)	Meloidogyne hapla (Root-knot nematode worm)
PFAM codes	PF01490
InterPro codes	IPR013057
PDB structures (whole Protein)	-

A0A1I8B0S5F1

AF4

Model Sequence

ESM1

Model Sequence