A0A1J0VRD0 | AlphaKnot 2.0

AF4

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Information

Protein name	Integral membrane protein
Main knot	3₁ (53%)
Global pLDDT	79.59
Species	Nocardia mangyaensis
UniProt	A0A1J0VRD0
Structure Prediction Model	AlphaFold v4: A0A1J0VRD0
PDB structures	-
Model length	364
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					76.5	67-246	180	1-66, 247-364	66	118

Model Sequence

MATEVTLSGDALVLPGGVRVTFVRTLRLPESGTYPLPPGLGTFPLRRVADHPDTVPGEWRKRGGVMLPVYQREAMWLRFSATTPTALKVAVGKVCAVSGKPWSDSLGKEPQNYLALPDQPWLDGINSGDGTVRQFVAVPLGLGATVEGQVTGSEQWGGVQLAAHGLTEDARAVWDTEQEALRRSLRPAANPVGYAVPEGMVAGAPMAVSAPWSGAPAGAPAAPGSPAPTGAPRKSRGRSTARSMGMGAGGTMRQEIYADHRPIADYGREADGRVFVHLASAAEWQQITGEPAPPTPITAQAYTQHGLPWFDYYAADAEDLPPADELAAVRPTGDWLADEQPNPPIEDSLPVIPLGHKTIKDGDW

Comments

ESM1

Categories voted by users:

Information

Protein name	Integral membrane protein
Main knot	5₂ (62%)
Global pLDDT	75.65
Species	Nocardia mangyaensis
UniProt	A0A1J0VRD0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	364
ESM generation time	2023-06-27: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					86.5	22-296	275	1-21, 297-364	21	68

Model Sequence

Comments

Domain	Bacteria
Family	Nocardiaceae
Species (Full Name)	Nocardia mangyaensis
Gene	BOX37_12180
PDB structures (whole Protein)	-

A0A1J0VRD0F1

AF4

Model Sequence

ESM1

Model Sequence