A0A1K1NKC1 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	LPP20 lipoprotein
Main knot	3₁ (62%)
Global pLDDT	86.89
Species	Selenomonas ruminantium
UniProt	A0A1K1NKC1
Structure Prediction Model	AlphaFold v4: A0A1K1NKC1
PDB structures	-
Model length	280
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.8	178-278	101	1-177, 279-280	177	2

Model Sequence

MKRMVRAGRILGLTMVVLLWSVVSVLAAEGNVDWDNRVITVTGMGAAPSNAMNPAQARMMARRAAVVDGYRQLAEVVKGVNVDSETTVENMMVTSDVIKTKVSGLIQGAAVVAEQEIPGGGYQVTMQMPMFGGGNSLASAVMPPAQAAPEAFPAPQVPTGSSAADAPAGRAEGVYTGLVVDCRGLGLNPVMSPVIKNEQGNPIYGFKNLDYDKVIQYGMASYSTDPGNVKRAGSHPLVVKAIKLENHNGYPVLSLADANKVLVENGATHFLDATCVVFIR

Comments

ESM1

Categories voted by users:

Information

Protein name	LPP20 lipoprotein
Main knot	3₁ (66%)
Global pLDDT	88.76
Species	Selenomonas ruminantium
UniProt	A0A1K1NKC1
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	280
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					84.5	178-278	101	1-177, 279-280	177	2

Model Sequence

Comments

Domain	Bacteria
Family	Selenomonadaceae
Species (Full Name)	Selenomonas ruminantium
Gene	SAMN02910323_1436
PFAM codes	PF02169
InterPro codes	IPR024952
PDB structures (whole Protein)	-

A0A1K1NKC1F1

AF4

Model Sequence

ESM1

Model Sequence