A0A1K1NKE5 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	LPP20 lipoprotein
Main knot	3₁ (67%)
Global pLDDT	80.53
Species	Selenomonas ruminantium
UniProt	A0A1K1NKE5
Structure Prediction Model	AlphaFold v4: A0A1K1NKE5
PDB structures	-
Model length	324
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.3	222-322	101	1-221, 323-324	221	2

Model Sequence

MNRMSIGKYMLLMVLAVILVLPSGLAKASGVDWNDAKITVQGMGIAPPRAVNPAQARMLARRAAVVDGYRQLAEAVQGVNVDAETTVENMMVTSDVIKTKVNAMIKGARVIAESVTPDGGYQVTMEVSMFGVSNSVAQAVLTKPAVVEAFPEPVASVAPAMPSVSVSVNVNANVTPAPSLPTPPSIPAVTPPAAPTPVQPAAPAAPQSVASNAGAIGGFTGLVVDCRGLGLKPVMSPVIKNAEGQSIYGYKNLDYDKVIAEGMAAYTTNPDKISRAGSNPLVVKAVSLDNHNGNPVLSVADANRVLLENGKSGFLDNLKVVFLR

Comments

ESM1

Categories voted by users:

Information

Protein name	LPP20 lipoprotein
Main knot	3₁ (67%)
Global pLDDT	86.91
Species	Selenomonas ruminantium
UniProt	A0A1K1NKE5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	324
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.8	222-322	101	1-221, 323-324	221	2

Model Sequence

Comments

Domain	Bacteria
Family	Selenomonadaceae
Species (Full Name)	Selenomonas ruminantium
Gene	SAMN02910323_1438
PFAM codes	PF02169
InterPro codes	IPR024952
PDB structures (whole Protein)	-

A0A1K1NKE5F1

AF4

Model Sequence

ESM1

Model Sequence