| Protein name |
Peroxidase
|
| Main knot |
61 (52%)
|
| Global pLDDT |
91.07
|
| Species |
Bradyrhizobium erythrophlei
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v6:
 A0A1M5NYM9
|
| PDB structures |
-
|
| Model length |
276
|
| AlphaFold deposition date |
2026-06-01
|
| AlphaKnot deposition date |
2026-07-09
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |
92.22 | 61-271 | 211 | 1-60, 272-276 | 60 | 5 |
|
Knot |
Model Sequence |
MQGKESVPSILESDATGKVAEIYADIRKVLGTSIVNLIWRHLATIPGALEWTWITAKPLYRGPAPGYAEAVRRAIDLPVVPPFSRDTLAAAGLSNDDAARIRDILDSYHYTNALALVALSALVMHFEPAQQDTVRPLDSSPRPLGIKLPELPPMQSLKPEVVRLIEELNGFGEDTDKSLIASMYRHLGYWPTYLSLVRTMLVPLETNGQLHTLTRSIRDLARSYGSGLAQHLRPSTPPDSLQQALASCRRFVDHPISRMTGICSLIRTATDGTRSA
|
| Protein name |
Peroxidase
|
| Main knot |
61 (53%)
|
| Global pLDDT |
91.22
|
| Species |
Bradyrhizobium erythrophlei
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
A0A1M5NYM9
|
| PDB structures |
-
|
| Model length |
276
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
92.4 | 49-262 | 214 | 1-48, 263-276 | 48 | 14 |
|
Model Sequence |
MQGKESVPSILESDATGKVAEIYADIRKVLGTSIVNLIWRHLATIPGALEWTWITAKPLYRGPAPGYAEAVRRAIDLPVVPPFSRDTLAAAGLSNDDAARIRDILDSYHYTNALALVALSALVMHFEPAQQDTVRPLDSSPRPLGIKLPELPPMQSLKPEVVRLIEELNGFGEDTDKSLIASMYRHLGYWPTYLSLVRTMLVPLETNGQLHTLTRSIRDLARSYGSGLAQHLRPSTPPDSLQQALASCRRFVDHPISRMTGICSLIRTATDGTRSA
|
| Protein name |
Peroxidase
|
| Main knot |
61 (41%)
|
| Global pLDDT |
88.66
|
| Species |
Bradyrhizobium erythrophlei
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
276
|
| ESM generation time |
2023-06-22: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
92.2 | 68-267 | 200 | 1-67, 268-276 | 67 | 9 |
|
Model Sequence |
MQGKESVPSILESDATGKVAEIYADIRKVLGTSIVNLIWRHLATIPGALEWTWITAKPLYRGPAPGYAEAVRRAIDLPVVPPFSRDTLAAAGLSNDDAARIRDILDSYHYTNALALVALSALVMHFEPAQQDTVRPLDSSPRPLGIKLPELPPMQSLKPEVVRLIEELNGFGEDTDKSLIASMYRHLGYWPTYLSLVRTMLVPLETNGQLHTLTRSIRDLARSYGSGLAQHLRPSTPPDSLQQALASCRRFVDHPISRMTGICSLIRTATDGTRSA
|
| Domain |
Bacteria
|
| Family |
Nitrobacteraceae
|
| Species (Full Name) |
Bradyrhizobium erythrophlei
|
| Gene |
SAMN05444169_4921
|
| InterPro codes |
 IPR029032
|
| PDB structures (whole Protein) |
-
|
A0A1M5NYM9