| Protein name |
Por secretion system C-terminal sorting domain-containing protein
|
| Main knot |
Unknown (82%)
|
| Global pLDDT |
87.05
|
| Species |
Chryseolinea serpens
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A1M5QUU2
|
| PDB structures |
-
|
| Structure in AlphaLasso |
 A0A1M5QUU2: L0
|
| Model length |
1018
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
90.1 | 40-906 | 867 | 1-39, 907-1018 | 39 | 112 |
|
Model Sequence |
MLLFIAGLLSLPAISQVFPTGFSRVQVASGISNPTVMAFAPDGRIFVAQQNGALRVIKNGALLATPFIQISVNSSGERGLIGIALDPNFATNQFVYLYYTLPDGSRNRISRFTGNGDVVVPGSEVVLLNLDPLSTATNHNGGAMHFKNGLLYVAVGENANGANAQNLDTYLGKILRINPDGSVPAGNPFTTGSEQRRRVWAYGLRNPYTFSIQPGTGRIFINDVGQNTWEEIDDATAGGLNFGWPTAEGTSTNPAFTNPIFSYPHGSGDGAGCAITGGVFFNPASSNYPAAYRGRYFFQDLCNRWINMLDLTTTPASRLPFATGLGGDALSIDVGNDGNLYYLERSTGALFKVIYTVNTTPAIVTQPSNQTVAAGQPATFSVTATGTAPLAYQWQKTNVSISGATGASYTIASAQPADAGAYRVIVSNASGSVTSTAATLTVTAFNNPPVAQIITPTAGTLYRGGDTINFSGNATDTEDGTLPASAFTWLVDFHHDTHRHDGPPVADGVKSGSFTIPTSGEVADNVWYRLILIVTDAGGLRDTIYRDILPQKSTITLATQPAGLQVTLDGQPVTTPLSDLSVEGIQRTIGVVSPQTLAGQTYAFDHWLHGGAATQTISTPVNDVTYTAVYRLSTLRTPENPANTVNGLNYAYYEGVFTALPNFSAITPVESGNVTNVDLGPRNREDDYAFQFTGYINVPTDGTYTFYTSSDDGSRLQIGTTTVVNNDGLHSTVEASGAIGLRSGKHAVTITFFEHLGGATLTASYAGPGIAKQLIPASAFYRAGTAPGIQTLEAENATLSGPVVSNIHAGYTGTGFADYVNATGDYVQWSASIAAAGSYTLTFRYALVSGARPLSVSVNGTVVNASLAFPPTGAWATWSTVTITTNLNAGTNTIRTTAIGSSGPNVDNLVIQSASAAMSALASAPVAETQGNDKLSLSTYPNPATRQLFVEVATGNTSEAKLSLMNPTGRVVKSQIFSGLQEGANTLTLDVDDMTSGLYWLRVERGTLSQSRSIVIVK
|
|
2024.07.13 00:23
This is an artifact of AF modeling. The N-terminal domain and the domain near the C-terminus can both be analyzed independently for knot formation, and neither form knots. The model has extensive steric clashes between these 2 domains. |
| Domain |
Bacteria
|
| Family |
Fulvivirgaceae
|
| Species (Full Name) |
Chryseolinea serpens
|
| Gene |
SAMN04488109_3027
|
| PFAM codes |
PF07691, PF07995, PF16990, PF18962
|
| InterPro codes |
 IPR003599, IPR005084, IPR007110, IPR008979, IPR011041, IPR011042, IPR011658, IPR012938, IPR013783, IPR026444, IPR036179, IPR037524
|
| PDB structures (whole Protein) |
-
|
A0A1M5QUU2