| Protein name |
Urease accessory protein UreF
|
| Main knot |
61 (42%)
|
| Global pLDDT |
90.76
|
| Species |
Bradyrhizobium erythrophlei
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A1M7UQH4
|
| PDB structures |
-
|
| Model length |
282
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
92.4 | 32-273 | 242 | 1-31, 274-282 | 31 | 9 |
|
Model Sequence |
MLSASVQLPALPEIRVEDASPALDRIYSDIRRESGTPLVNLIYRHLATIPGGLEWVWGCIRINWGYHGLQSAAAAMPTVDIAAALPAALWRIAGLNDSDLAAIRALVAQYNLTNAANILAITALAHVARNPACWSDGVVLQWTETQDEPPVAAPSPLPKLDELSADMASLVYFVNGLGEEAQPTMVASLFRELTLWPGSLAVTAALLTPLAQSGELARLRQQTTQVAETIASQLISSSRIGFPPPPPAAREAVLNALDLFRTTLIAKLLPVGQILSRALAPA
|
| Protein name |
Urease accessory protein UreF
|
| Main knot |
61 (49%)
|
| Global pLDDT |
83.02
|
| Species |
Bradyrhizobium erythrophlei
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
282
|
| ESM generation time |
2023-06-25: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
85.6 | 59-272 | 214 | 1-58, 273-282 | 58 | 10 |
|
Model Sequence |
MLSASVQLPALPEIRVEDASPALDRIYSDIRRESGTPLVNLIYRHLATIPGGLEWVWGCIRINWGYHGLQSAAAAMPTVDIAAALPAALWRIAGLNDSDLAAIRALVAQYNLTNAANILAITALAHVARNPACWSDGVVLQWTETQDEPPVAAPSPLPKLDELSADMASLVYFVNGLGEEAQPTMVASLFRELTLWPGSLAVTAALLTPLAQSGELARLRQQTTQVAETIASQLISSSRIGFPPPPPAAREAVLNALDLFRTTLIAKLLPVGQILSRALAPA
|
| Domain |
Bacteria
|
| Family |
Nitrobacteraceae
|
| Species (Full Name) |
Bradyrhizobium erythrophlei
|
| Gene |
SAMN05444170_6241
|
| PDB structures (whole Protein) |
-
|
A0A1M7UQH4