A0A1Q3VLW3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (90%)
Global pLDDT	92.32
Species	Candidatus Accumulibacter sp
UniProt	A0A1Q3VLW3
Structure Prediction Model	AlphaFold v4: A0A1Q3VLW3
PDB structures	-
Model length	266
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					96.0	101-147	47	1-100, 148-266	100	119

Model Sequence

MGSGLVNPVGRFAADVVTLFPEMFAAIAQSGVTRRALEEGRWTLDFQNPRDFTSDNHRTVDDRPYGGGPGMVMMPGPLEAAIGAAKARQAKAGVTRSRVIYLSPQGAPLTHERVMRLAQGDEGVVLLCGRYEGVDERLIERCVDEEISIGDFVLSGGEIPAMALLDAVVRQLPGVLNDAESAQQDSFVAGLLDCPHYTRPEEYEGQRVPDVLLSGHHEQIRRWRLKQALGRTWRRRPELLAGRSLSKEETQLLGQFQEQCGQENKA

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (94%)
Global pLDDT	94.46
Species	Candidatus Accumulibacter sp
UniProt	A0A1Q3VLW3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	266
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.5	101-147	47	1-100, 148-266	100	119

Model Sequence

Comments

Domain	Bacteria
Family	unclassified Candidatus Accumulibacter
Species (Full Name)	Candidatus Accumulibacter sp. 66-26
Gene	trmD BGO63_01990
PFAM codes	PF01746
InterPro codes	IPR002649, IPR016009, IPR023148, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A1Q3VLW3F1

AF4

Model Sequence

ESM1

Model Sequence