A0A1S2LF54 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Plasmid pRiA4b ORF-3 family protein
Main knot	3₁ (46%)
Global pLDDT	94.74
Species	Anaerobacillus isosaccharinicus
UniProt	A0A1S2LF54
Structure Prediction Model	AlphaFold v4: A0A1S2LF54
PDB structures	-
Structure in AlphaLasso	A0A1S2LF54: L_+1N
Model length	364
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.1	3-119	117	1-2, 120-364	2	245

Model Sequence

MFVQCTKKLLDELKIKNVPENEEEVLFSWHANVITINRKKAVVFVNDQNRYVIALYGLKAKDFKKLDQLFLDAVKETFQAECIKNEIIEQFIQHSKQVVYGKTKNRTSVARMNRSCEDFQYQAQEFEQSSIIQSAVSKFASSFLVGNGNGEYIQPNEKMYEALEMFFEQPIFGCEAYELKVTLELEKYRVWRKVIVPSHFTFRNLHKIIQLVFGWQNYHLHDFYIYDDDRPILNLVCDEEAFAYSDKNDTPMLFDHEKRLNDYLPACKKVKYTYDFGDHWEHSIKVTKVYDAYSKNYPECIDGEGSTPPEDVGGEGGYEYFREILANTSHPEYENMLQWGRSQEYKEFDLNEVNRELKLNSDRL

Comments

ESM1

Categories voted by users:

Information

Protein name	Plasmid pRiA4b ORF-3 family protein
Main knot	3₁ (51%)
Global pLDDT	89.68
Species	Anaerobacillus isosaccharinicus
UniProt	A0A1S2LF54
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A1S2LF54: L_+1N
Model length	364
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.9	2-101	100	1-1, 102-364	1	263

Model Sequence

Comments

Domain	Bacteria
Family	Bacillaceae
Species (Full Name)	Anaerobacillus isosaccharinicus
Gene	AWH56_021350 AWH56_16350
PFAM codes	PF07929
InterPro codes	IPR012912, IPR024047
PDB structures (whole Protein)	-

A0A1S2LF54F1

AF4

Model Sequence

ESM1

Model Sequence