| Protein name |
tRNA_int_endo_N domain-containing protein
|
| Main knot |
31 (43%)
|
| Global pLDDT |
96.09
|
| Species |
Trichlorobacter thiogenes
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A1T4L9E6
|
| PDB structures |
-
|
| Model length |
167
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
96.2 | 2-102 | 101 | 1-1, 103-167 | 1 | 65 |
|
Model Sequence |
MIFHCTKALAAKLPSVSPTPLTDANPLGSWHAHLHVIDRRQCIMFCHDTTRFVLFEAGLKKEQFQNLGKFHKELYLAALIAMGVPEATLKRVELAMGPALFDTATDRSVLGTLNQSRFEFDFFLDDYTNILEVDPLIAAKWFNHRPLTARGAWLWADKEMLALVSSL
|
| Protein name |
tRNA_int_endo_N domain-containing protein
|
| Main knot |
31 (45%)
|
| Global pLDDT |
86.88
|
| Species |
Trichlorobacter thiogenes
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
167
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
89.1 | 3-106 | 104 | 1-2, 107-167 | 2 | 61 |
|
Model Sequence |
MIFHCTKALAAKLPSVSPTPLTDANPLGSWHAHLHVIDRRQCIMFCHDTTRFVLFEAGLKKEQFQNLGKFHKELYLAALIAMGVPEATLKRVELAMGPALFDTATDRSVLGTLNQSRFEFDFFLDDYTNILEVDPLIAAKWFNHRPLTARGAWLWADKEMLALVSSL
|
| Domain |
Bacteria
|
| Family |
Geobacteraceae
|
| Species (Full Name) |
Trichlorobacter thiogenes
|
| Gene |
SAMN02745119_00843
|
| PDB structures (whole Protein) |
-
|
A0A1T4L9E6