| Protein name |
Type I site-specific deoxyribonuclease
|
| Main knot |
81 (62%)
|
| Global pLDDT |
90.38
|
| Species |
Novibacillus thermophilus
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A1U9K6N3
|
| PDB structures |
-
|
| Model length |
273
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
92.3 | 28-247 | 220 | 1-27, 248-273 | 27 | 26 |
|
Model Sequence |
MLNAVSLLEEFVESGDYREWKQAEHELSIVRNEFKRFLKEDEMRRDFSQMGINLVAKYRRIPVYEVDHEGLNRYLHENYGLLIPVSTLDTGIRKDNPELWEALGDYQLPNEWYVRFTPNKAGRAEKEDVDYSLNLRELSNAFYDLSERVESYKKTYEDIREKLMKDKELQLSRKVQTKFGSVSMQAKRPEFDMKRILQEYGEDFLIHHARVRMKELDHFIERGYIRKHETDQFRKVTDIRLAFIVQKLDAEQRQLEMLDRRTNRMVEALRGIG
|
| Protein name |
Type I site-specific deoxyribonuclease
|
| Main knot |
81 (64%)
|
| Global pLDDT |
89.5
|
| Species |
Novibacillus thermophilus
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
273
|
| ESM generation time |
2023-06-22: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
95.3 | 28-244 | 217 | 1-27, 245-273 | 27 | 29 |
|
Model Sequence |
MLNAVSLLEEFVESGDYREWKQAEHELSIVRNEFKRFLKEDEMRRDFSQMGINLVAKYRRIPVYEVDHEGLNRYLHENYGLLIPVSTLDTGIRKDNPELWEALGDYQLPNEWYVRFTPNKAGRAEKEDVDYSLNLRELSNAFYDLSERVESYKKTYEDIREKLMKDKELQLSRKVQTKFGSVSMQAKRPEFDMKRILQEYGEDFLIHHARVRMKELDHFIERGYIRKHETDQFRKVTDIRLAFIVQKLDAEQRQLEMLDRRTNRMVEALRGIG
|
| Domain |
Bacteria
|
| Family |
Thermoactinomycetaceae
|
| Species (Full Name) |
Novibacillus thermophilus
|
| Gene |
B0W44_07720
|
| PDB structures (whole Protein) |
-
|
A0A1U9K6N3