| Protein name |
Restriction endonuclease
|
| Main knot |
81 (55%)
|
| Global pLDDT |
89.8
|
| Species |
Paenibacillus ferrarius
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A1V4H6V6
|
| PDB structures |
-
|
| Model length |
272
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
90.0 | 25-246 | 222 | 1-24, 247-272 | 24 | 26 |
|
Model Sequence |
MSLSNFEKFLENGDYSRLKRISEETKLIKDCLRNELIKEETKRIEWRECGVVGKFRRVNRYDYNYTALNEYLFNLGILPVLSTVKEACLTEQEKQTLLKVNKVDREDTVYFFPTKFNLGLKVARDFVLRINQLSTVEKVILWKEKMGFKEKLEKEWKALRNSLNGLLKQGENSKLESVFGTLILKSKNVYNPVDVFELFGADVLIQSTRARLEVLEEYAAKGFLNMSEINNYRRVVNVEQQFVLMELDKEERCKDWFSKRLNKLSELSRRRD
|
| Protein name |
Restriction endonuclease
|
| Main knot |
81 (62%)
|
| Global pLDDT |
89.75
|
| Species |
Paenibacillus ferrarius
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
272
|
| ESM generation time |
2023-06-24: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
89.8 | 25-242 | 218 | 1-24, 243-272 | 24 | 30 |
|
Model Sequence |
MSLSNFEKFLENGDYSRLKRISEETKLIKDCLRNELIKEETKRIEWRECGVVGKFRRVNRYDYNYTALNEYLFNLGILPVLSTVKEACLTEQEKQTLLKVNKVDREDTVYFFPTKFNLGLKVARDFVLRINQLSTVEKVILWKEKMGFKEKLEKEWKALRNSLNGLLKQGENSKLESVFGTLILKSKNVYNPVDVFELFGADVLIQSTRARLEVLEEYAAKGFLNMSEINNYRRVVNVEQQFVLMELDKEERCKDWFSKRLNKLSELSRRRD
|
| Domain |
Bacteria
|
| Family |
Paenibacillaceae
|
| Species (Full Name) |
Paenibacillus ferrarius
|
| Gene |
BC351_13640
|
| PDB structures (whole Protein) |
-
|
A0A1V4H6V6