| Protein name |
Integrase
|
| Main knot |
31 (55%)
|
| Global pLDDT |
92.05
|
| Species |
Andreprevotia lacus
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A1W1XKF6
|
| PDB structures |
-
|
| Model length |
220
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
92.5 | 2-120 | 119 | 1-1, 121-220 | 1 | 100 |
|
Model Sequence |
MLLFQCTKDACAALTSTRKGVTESWICDHPLPSDDPAWVWQLHAVKIARHPVLVAMHADTRFSMVFWGVKKGDGETLIQLFFERMLNHVAWLARDFALLDASGLKAMADRLIDVHQQCTFRAGGDRSVQTHLNEVVRYCRDAVADNGGLPDNQEQAAGFDAYLNQAPRGARGRPHWFPDDEMLCACLRDFAGVDEAGLLHARERMRTARYRDIEQLLQQS
|
| Protein name |
Integrase
|
| Main knot |
31 (54%)
|
| Global pLDDT |
88.39
|
| Species |
Andreprevotia lacus
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
220
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
91.8 | 2-120 | 119 | 1-1, 121-220 | 1 | 100 |
|
Model Sequence |
MLLFQCTKDACAALTSTRKGVTESWICDHPLPSDDPAWVWQLHAVKIARHPVLVAMHADTRFSMVFWGVKKGDGETLIQLFFERMLNHVAWLARDFALLDASGLKAMADRLIDVHQQCTFRAGGDRSVQTHLNEVVRYCRDAVADNGGLPDNQEQAAGFDAYLNQAPRGARGRPHWFPDDEMLCACLRDFAGVDEAGLLHARERMRTARYRDIEQLLQQS
|
| Domain |
Bacteria
|
| Family |
Chromobacteriaceae
|
| Species (Full Name) |
Andreprevotia lacus DSM 23236
|
| Gene |
SAMN02745857_01839
|
| PDB structures (whole Protein) |
-
|
A0A1W1XKF6