| Protein name |
Integrase
|
| Main knot |
31 (46%)
|
| Global pLDDT |
95.18
|
| Species |
Gemmiger sp
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A1Y3XTL5
|
| PDB structures |
-
|
| Model length |
170
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
96.4 | 3-103 | 101 | 1-2, 104-170 | 2 | 67 |
|
Model Sequence |
MELGLTFPLQRFLKQKTPGYGIEPDRRFCWDLHCIDLRGRKCLLAVHCHTRYTFVYYDAAPFQWADLPGLFRQGLTESLSAAGFSPIQTEEYLRRANSIALTRTHGRREVAFLNRAWEDVLALDLCLDTASQTQPLLDHAVNTRPSRCAGFEGLGTGLERMRNAFHTGGY
|
| Protein name |
Integrase
|
| Main knot |
31 (39%)
|
| Global pLDDT |
82.74
|
| Species |
Gemmiger sp
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
170
|
| ESM generation time |
2023-06-22: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
86.7 | 3-103 | 101 | 1-2, 104-170 | 2 | 67 |
|
Model Sequence |
MELGLTFPLQRFLKQKTPGYGIEPDRRFCWDLHCIDLRGRKCLLAVHCHTRYTFVYYDAAPFQWADLPGLFRQGLTESLSAAGFSPIQTEEYLRRANSIALTRTHGRREVAFLNRAWEDVLALDLCLDTASQTQPLLDHAVNTRPSRCAGFEGLGTGLERMRNAFHTGGY
|
| Domain |
Bacteria
|
| Family |
unclassified Gemmiger
|
| Species (Full Name) |
Gemmiger sp. An50
|
| Gene |
B5G03_02270
|
| PDB structures (whole Protein) |
-
|
A0A1Y3XTL5