A0A252D8A2 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	rRNA methylase
Main knot	3₁ (87%)
Global pLDDT	90.87
Species	Nostoc sp
UniProt	A0A252D8A2
Structure Prediction Model	AlphaFold v4: A0A252D8A2
PDB structures	-
Model length	278
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					92.4	201-242	42	1-200, 243-278	200	36

Model Sequence

MAGVKNSSHERLDVEATLTEVEKLQFDRAHRHASGLFYVEGVRNFVKAIDNGFDISAIVFSEKLLTAPLARKLVRKSRRAGVPCISVTPEQFRRVSQTERASGIGAIAHQRWFNLHDISPQAGLCWVALQTVRSPGNLGTLIRTSDAVGGAGFIFIGGSVDPFDPDVVRASMGSLFHQKFVRTSLSALRHWVRHQDCSTIGASPDGMADFHQFNYPQSTLLFLGEERQGLTSQQRDLCQHLVRIPMVGAVDSLNLAVAGSLLMYEIYKSRTSSIPIHS

Comments

ESM1

Categories voted by users:

Information

Protein name	rRNA methylase
Main knot	3₁ (89%)
Global pLDDT	95.24
Species	Nostoc sp
UniProt	A0A252D8A2
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	278
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.5	40-128	89	1-39, 129-278	39	150

Model Sequence

Comments

Domain	Bacteria
Family	Nostocaceae
Species (Full Name)	Nostoc sp. T09
Gene	BV372_29750
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR013123, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

A0A252D8A2F1

AF4

Model Sequence

ESM1

Model Sequence