A0A259TZC5F1

PAS domain S-box protein
AF6
Categories voted by users:
Information
Protein name
PAS domain S-box protein
Main knot
84 (90%)
Global pLDDT
72.58
Species
Rubricoccus marinus
UniProt
Structure Prediction Model
AlphaFold v6:  A0A259TZC5
PDB structures
-
Model length
838
AlphaFold deposition date
2026-06-01
AlphaKnot deposition date
2026-07-09
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
74.39 160-817 658 1-159, 818-838 159 21 Knot
Model Sequence
MPFFSRSIDEVLAPQVLRALPVGIAVYKLEKPGDPASLRLVYANEASEAITGLKSSKEVGRFMREITPEVMDTDVPAAYTRVAMSGKAENLGTVTYGDDRIQRSTFHLRAIPLEDRMVAVVFEDVSDSADLAELRKAQDSLVSKERRYRSLVEATAAIVWQTPPSGEFESDQPHWRAFTGQSEEELMGWGWLGAIHPDDNQKTADAWNAAVAARDTYNVVHRLRRHDGEYRHMLARAVPVLDASGEILEWVGVHTDVHDQTLASDALEASESRFRTLFDAFGDVVLVYPVREDGPGELLAFNRAAVQRYGYTEEELHDLTIQDLIKPGSLSVPDAIARLRRETQATFDSVHLTKEGQRLHMSTNARLVEYDGELCILAICRDDTERRAFQRQLSRANLRLERTVNERTAEIEAFADDLRILHRIITEEHASPEARFDAFLRAGCEMFDLPLGILSSTPKDPETGEALYRLEAVVSPDPSIEAGLTIPLSEAFCDAVYETGETVVYGDAADEAPSHPACVQRGLRAFIGTPIRVDGEFFGTLNFVSPEAREDGFKTTELDLIEMMAGAIGRQISLDRVTQKNARDLAWHRAVAEAVNDAVVHIDAEGHVLEHNEAAEDVLEGDHLPLQRVDRYGAPLAPEAFPERVAMLDERTVRSRLQGLGDEEMRQWYLVNASPVDEDHDGMLDGAVVVLQDVTAVQQIAERAMRSRDLLRSVLAASPEGVMAFRAIREDGEIVDFEWILANPRVETIIGRSEADLIGNRLLEVFPGNREAGLFDAYVDVVESQEPYETVIPYNHDGLNTSFRLVAVPIPSEDGFTVTFVEVIDVVDLDDTLPAEDT
Comments
AF4
Categories voted by users:
Information
Protein name
PAS domain S-box protein
Main knot
84 (88%)
Global pLDDT
72.69
Species
Rubricoccus marinus
UniProt
Structure Prediction Model
AlphaFold v4:  A0A259TZC5
PDB structures
-
Model length
838
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
74.2 158-792 635 1-157, 793-838 157 46
Model Sequence
MPFFSRSIDEVLAPQVLRALPVGIAVYKLEKPGDPASLRLVYANEASEAITGLKSSKEVGRFMREITPEVMDTDVPAAYTRVAMSGKAENLGTVTYGDDRIQRSTFHLRAIPLEDRMVAVVFEDVSDSADLAELRKAQDSLVSKERRYRSLVEATAAIVWQTPPSGEFESDQPHWRAFTGQSEEELMGWGWLGAIHPDDNQKTADAWNAAVAARDTYNVVHRLRRHDGEYRHMLARAVPVLDASGEILEWVGVHTDVHDQTLASDALEASESRFRTLFDAFGDVVLVYPVREDGPGELLAFNRAAVQRYGYTEEELHDLTIQDLIKPGSLSVPDAIARLRRETQATFDSVHLTKEGQRLHMSTNARLVEYDGELCILAICRDDTERRAFQRQLSRANLRLERTVNERTAEIEAFADDLRILHRIITEEHASPEARFDAFLRAGCEMFDLPLGILSSTPKDPETGEALYRLEAVVSPDPSIEAGLTIPLSEAFCDAVYETGETVVYGDAADEAPSHPACVQRGLRAFIGTPIRVDGEFFGTLNFVSPEAREDGFKTTELDLIEMMAGAIGRQISLDRVTQKNARDLAWHRAVAEAVNDAVVHIDAEGHVLEHNEAAEDVLEGDHLPLQRVDRYGAPLAPEAFPERVAMLDERTVRSRLQGLGDEEMRQWYLVNASPVDEDHDGMLDGAVVVLQDVTAVQQIAERAMRSRDLLRSVLAASPEGVMAFRAIREDGEIVDFEWILANPRVETIIGRSEADLIGNRLLEVFPGNREAGLFDAYVDVVESQEPYETVIPYNHDGLNTSFRLVAVPIPSEDGFTVTFVEVIDVVDLDDTLPAEDT
Comments
Domain Bacteria
Family Rubricoccaceae
Species (Full Name) Rubricoccus marinus
Gene BSZ36_08865
PFAM codes  PF08447,  PF08448,  PF13185,  PF13188,  PF13426
InterPro codes  IPR000014,  IPR000700,  IPR001610,  IPR003018,  IPR013655,  IPR013656,  IPR029016,  IPR035965
PDB structures (whole Protein) -
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