A0A2D3C3M1 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Restriction endonuclease
Main knot	3₁ (79%)
Global pLDDT	77.49
Species	Methanohalophilus portucalensis
UniProt	A0A2D3C3M1
Structure Prediction Model	AlphaFold v4: A0A2D3C3M1
PDB structures	-
Model length	353
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.6	174-324	151	1-173, 325-353	173	29

Model Sequence

MKQNVTQILKDIFTSSGYRIVDSSIADLIAEKDEKKMYIKFSNLLNTSYIEDFAYNIRDGAGLIVATGNASEEQIEFAKKKGVIVWDREELAYQIGNAVLADIEGESIELGEQSAPVEKATEEYIIADDKKKKPNVFAGTKREVENRAIESKPEVKSDVETIPSVENKVIDLHSAPVNITGERAISIAKPHQRDVTNAALKFVPLWKYTYEIQAQRQFRSKIIDIEGDGEGYFNSMNEIFEELDLPGISNQIEVEVSDYEVKAPIVTKEEATKAIYERIIDQYTRDVKFDNTIGEAIISEHKRISPSKKEIEMEIEMVYLPVWEAKGKRNSVEINATNGEVLLNPVDNDVEIM

Comments

ESM1

Categories voted by users:

Information

Protein name	Restriction endonuclease
Main knot	3₁ (79%)
Global pLDDT	83.33
Species	Methanohalophilus portucalensis
UniProt	A0A2D3C3M1
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	353
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					88.1	174-324	151	1-173, 325-353	173	29

Model Sequence

Comments

Domain	Archaea
Family	Methanosarcinaceae
Species (Full Name)	Methanohalophilus portucalensis
Gene	BKM01_00025
PDB structures (whole Protein)	-

A0A2D3C3M1F1

AF4

Model Sequence

ESM1

Model Sequence