A0A2D8KUC3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	rRNA methyltransferase
Main knot	3₁ (80%)
Global pLDDT	92.81
Species	Gramella sp
UniProt	A0A2D8KUC3
Structure Prediction Model	AlphaFold v4: A0A2D8KUC3
PDB structures	-
Model length	269
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					92.1	196-237	42	1-195, 238-269	195	32

Model Sequence

MIRKITSIQNKEIKWLLQLQEKSRNRRKEGVFVIEGQREIELALKGNYIPVQLYYLPEKIEFDKVLAYSKITDDPAAITELNQEVYEKLAYRSSTEGIIGVFKSKNHELDDLELNSENPLILIAEAPEKPGNIGALLRTADAAAVDAVIIANPKTDLYNPNIIRSSVGCIFTNQIATGSTAEIISYLKRQNVNIYTAALQASENYYDIDFTEASAIVVGTEATGLSPEWIENADSNIIIPMHGEIDSMNVSVAAGILIFEAKRQRITRA

Comments

ESM1

Categories voted by users:

Information

Protein name	rRNA methyltransferase
Main knot	3₁ (81%)
Global pLDDT	95.47
Species	Gramella sp
UniProt	A0A2D8KUC3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	269
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.4	35-119	85	1-34, 120-269	34	150

Model Sequence

Comments

Domain	Bacteria
Family	Flavobacteriaceae
Species (Full Name)	Gramella sp
Gene	CME35_13785
PFAM codes	PF00588
InterPro codes	IPR001537, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

A0A2D8KUC3F1

AF4

Model Sequence

ESM1

Model Sequence