A0A2E5YK03 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	tRNA 2-selenouridine(34) synthase MnmH
Main knot	3₁ (80%)
Global pLDDT	91.05
Species	Deltaproteobacteria bacterium
UniProt	A0A2E5YK03
Structure Prediction Model	AlphaFold v4: A0A2E5YK03
PDB structures	-
Model length	388
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.0	10-160	151	1-9, 161-388	9	228

Model Sequence

MQPAATTTIPSIDTAAALATPGTHVIDLRSPSEYEEDHLPGAVNHPLFGDAERKLIGTLYKQVSPEAAYEKAALLVDEGVGELVSGIANTVGKQQPEGEVEAVARAITGDGFGAITRGVEVTPAKELPAAPVVVHCWRAGLRSLSVAVLLRGLGWDEALILEGGYKAYRRHVIDSLKEATLPEAFVLRGLTGVGKTLVLRELERIRPGWTLDLEGHAQHRSSILGMVGLKPVGQKAFESDIAKRLRAGFPADLVVYEGESRKVGDSIVPERIWESLVSGKNLKLTTTVERRVEALREDYLAEDGATEALLERLPFIEQRLGPVKWKGVLTGLLEDERIDELVEALLEHYYDPLYLHSEKGREHDATIDSKDPTACAEEVAAWIESARG

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA 2-selenouridine(34) synthase MnmH
Main knot	3₁ (82%)
Global pLDDT	92.23
Species	Deltaproteobacteria bacterium
UniProt	A0A2E5YK03
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	388
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					94.3	10-160	151	1-9, 161-388	9	228

Model Sequence

Comments

Domain	Bacteria
Family	unclassified Deltaproteobacteria
Species (Full Name)	Deltaproteobacteria bacterium
Gene	CL933_10385
InterPro codes	IPR001763, IPR036873
PDB structures (whole Protein)	-

A0A2E5YK03F1

AF4

Model Sequence

ESM1

Model Sequence