A0A2K5Q5Y4 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (84%)
Global pLDDT	79.31
Species	Panamanian white-faced capuchin
UniProt	A0A2K5Q5Y4
Structure Prediction Model	AlphaFold v4: A0A2K5Q5Y4
PDB structures	-
Model length	396
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.1	76-288	213	1-75, 289-396	75	108

Model Sequence

MSLGWLERPPALRRAAGAGARRLSGSRRGDVGLTSSAAGLLSSVAGGSWCGGRPRARGGSGRCVAGAMTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (80%)
Global pLDDT	80.89
Species	Panamanian white-faced capuchin
UniProt	A0A2K5Q5Y4
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	396
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					53.7	77-288	212	1-76, 289-396	76	108

Model Sequence

Comments

Domain	Eukaryota
Family	Cebidae
Species (Full Name)	Cebus imitator (Panamanian white-faced capuchin) (Cebus capucinus imitator)
Gene	UCHL5
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A2K5Q5Y4F1

AF4

Model Sequence

ESM1

Model Sequence