A0A2K9LEN2 | AlphaKnot 2.0

AF4

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Information

Protein name	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (EC 2.1.1.185) (23S rRNA (guanosine2251 2'-O)-methyltransferase) (23S rRNA Gm2251 2'-O-methyltransferase)
Main knot	3₁ (79%)
Global pLDDT	90.97
Species	Rhodocyclaceae bacterium
UniProt	A0A2K9LEN2
Structure Prediction Model	AlphaFold v4: A0A2K9LEN2
PDB structures	-
Model length	222
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					94.6	151-192	42	1-150, 193-222	150	30

Model Sequence

MFELYLSAQRHDARARDAAKLAEAAGVRLIQIESDRLDGMVGTRRHQGVVARVDARRRELKLTDVLDSLDENALILVLDGVQDPHNLGACLRVADAAGAHAVLAPKDRAVGLNATAVKVASGAADTVPYITVTNLARALRQMQEAGIWVIGAAGEADKSLYQIDQRGPIAWVLGAEGDGLRRLTRETCDELAKIPMFGSVESLNVSVASGICLFEARRQRSA

Comments

ESM1

Categories voted by users:

Information

Protein name	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (EC 2.1.1.185) (23S rRNA (guanosine2251 2'-O)-methyltransferase) (23S rRNA Gm2251 2'-O-methyltransferase)
Main knot	3₁ (78%)
Global pLDDT	94.44
Species	Rhodocyclaceae bacterium
UniProt	A0A2K9LEN2
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	222
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.1	151-192	42	1-150, 193-222	150	30

Model Sequence

Comments

Domain	Bacteria
Family	Rhodocyclaceae
Species (Full Name)	Rhodocyclaceae bacterium
Gene	rlmB B4966_03105
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR004441, IPR013123, IPR024915, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

A0A2K9LEN2F1

AF4

Model Sequence

ESM1

Model Sequence