| Protein name |
Plasmid-related protein
|
| Main knot |
31 (71%)
|
| Global pLDDT |
90.3
|
| Species |
Vibrio cholerae
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A2Z4TM87
|
| PDB structures |
-
|
| Model length |
200
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
95.5 | 20-120 | 101 | 1-19, 121-200 | 19 | 80 |
|
Model Sequence |
MAQAKPNYSKPIFEQSFTINSLQAQRVVDRVFRRTVSALYGIDVILRIIGDDNEIDEVEQIISQLIEDCAKAVDNEQARLDKLMETNGIDEVPDYTDPITFNAKISSPQVGQFVGLVRKLDALMISMDTLWLSSVLSNKQRVDGNYAWQQRIIKLARRIIDIEIRARKSAQAKGKEAEVEQAVPSTDDDITEKETDTPAN
|
| Protein name |
Plasmid-related protein
|
| Main knot |
31 (88%)
|
| Global pLDDT |
90.96
|
| Species |
Vibrio cholerae
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
200
|
| ESM generation time |
2023-06-26: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
77.8 | 20-120 | 101 | 1-19, 121-200 | 19 | 80 |
|
Model Sequence |
MAQAKPNYSKPIFEQSFTINSLQAQRVVDRVFRRTVSALYGIDVILRIIGDDNEIDEVEQIISQLIEDCAKAVDNEQARLDKLMETNGIDEVPDYTDPITFNAKISSPQVGQFVGLVRKLDALMISMDTLWLSSVLSNKQRVDGNYAWQQRIIKLARRIIDIEIRARKSAQAKGKEAEVEQAVPSTDDDITEKETDTPAN
|
| Domain |
Bacteria
|
| Species (Full Name) |
Vibrio cholerae serotype O1 biovar El Tor
|
| Gene |
orf00164
|
| PDB structures (whole Protein) |
-
|
A0A2Z4TM87