| Protein name |
tRNA wybutosine-synthesizing protein 4 (EC 2.1.1.290) (EC 2.3.1.231) (tRNA(Phe) (7-(3-amino-3-(methoxycarbonyl)propyl)wyosine(37)-N)-methoxycarbonyltransferase) (tRNA(Phe) (7-(3-amino-3-carboxypr...
|
| Main knot |
41 (58%)
|
| Global pLDDT |
84.14
|
| Species |
white Piedmont truffle
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A317T3D9
|
| PDB structures |
-
|
| Model length |
298
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
87.6 | 25-291 | 267 | 1-24, 292-298 | 24 | 7 |
|
Model Sequence |
MRSRPPPNLRSIASSSRPSRHPPVPLRISPLPILSPSTLPTFRDSYFNPTLPCIFPPSHFTSTLPAISQWFIPHPKFPHLRAPNTQFFHKTLGDRINAPLLMEVSLHSEGKFLQNYTPFAKLLEDISFAGPRDRSITTYLAQCPINEIPELMDTLPTPQYIHAGKGDIYNVNLWMGHAALIVTPLHKDPNPNLFVQLAGTKRIRLFEPATGRGIMQRFGGGVKRFRMPDEMMDGKHKGILEKVVWGEDEAEDEAEDGVPGFEATVGPGDGLFIPKGWWHAVRSVGEDGAVASVNWWFR
|
| Protein name |
tRNA wybutosine-synthesizing protein 4 (EC 2.1.1.290) (EC 2.3.1.231) (tRNA(Phe) (7-(3-amino-3-(methoxycarbonyl)propyl)wyosine(37)-N)-methoxycarbonyltransferase) (tRNA(Phe) (7-(3-amino-3-carboxypr...
|
| Main knot |
41 (64%)
|
| Global pLDDT |
85.95
|
| Species |
white Piedmont truffle
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
298
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
84.9 | 26-296 | 271 | 1-25, 297-298 | 25 | 2 |
|
Model Sequence |
MRSRPPPNLRSIASSSRPSRHPPVPLRISPLPILSPSTLPTFRDSYFNPTLPCIFPPSHFTSTLPAISQWFIPHPKFPHLRAPNTQFFHKTLGDRINAPLLMEVSLHSEGKFLQNYTPFAKLLEDISFAGPRDRSITTYLAQCPINEIPELMDTLPTPQYIHAGKGDIYNVNLWMGHAALIVTPLHKDPNPNLFVQLAGTKRIRLFEPATGRGIMQRFGGGVKRFRMPDEMMDGKHKGILEKVVWGEDEAEDEAEDGVPGFEATVGPGDGLFIPKGWWHAVRSVGEDGAVASVNWWFR
|
A0A317T3D9
IPR003347